View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1461_low_12 (Length: 375)

Name: NF1461_low_12
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1461_low_12
NF1461_low_12
[»] chr7 (7 HSPs)
chr7 (13-357)||(40230952-40231296)
chr7 (17-107)||(33540035-33540125)
chr7 (17-112)||(38190203-38190297)
chr7 (17-119)||(19468253-19468355)
chr7 (17-119)||(22317608-22317712)
chr7 (17-119)||(39608207-39608311)
chr7 (17-91)||(44767282-44767352)
[»] chr2 (4 HSPs)
chr2 (17-119)||(2104153-2104253)
chr2 (17-113)||(5868914-5869011)
chr2 (20-118)||(18242074-18242173)
chr2 (17-48)||(26290487-26290518)
[»] chr6 (5 HSPs)
chr6 (17-119)||(1112422-1112525)
chr6 (17-113)||(26497786-26497883)
chr6 (19-119)||(3361976-3362077)
chr6 (17-101)||(7201174-7201257)
chr6 (17-84)||(609581-609648)
[»] chr5 (2 HSPs)
chr5 (17-101)||(27246286-27246369)
chr5 (17-117)||(11245453-11245553)
[»] chr4 (5 HSPs)
chr4 (17-124)||(6086973-6087078)
chr4 (17-119)||(16061380-16061482)
chr4 (19-111)||(6166446-6166537)
chr4 (17-119)||(18886236-18886338)
chr4 (17-48)||(32727973-32728004)
[»] chr3 (2 HSPs)
chr3 (17-107)||(42624825-42624913)
chr3 (17-101)||(54561170-54561252)
[»] chr1 (4 HSPs)
chr1 (17-119)||(7380303-7380404)
chr1 (17-94)||(50509855-50509931)
chr1 (17-48)||(24892009-24892040)
chr1 (17-48)||(26687692-26687723)
[»] chr8 (4 HSPs)
chr8 (17-111)||(21466818-21466917)
chr8 (17-101)||(13751387-13751472)
chr8 (17-101)||(44004266-44004348)
chr8 (17-48)||(9946783-9946814)


Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 40230952 - 40231296
Alignment:
Q  13 attctcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcatag 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||    
T  40230952 attctcaatttaaatagaagattaatcttttaaaaatattgtgaatgttttttattaagtgcttatttttactatgagagtcgagcctctagtttcatag 40231051  T
Q  113 gaacggctctataatgaagacaatataattaagctatctcccctgtatggcaatgaattatcaccctcggattcttttaagcttaaactatgacacctag 212  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40231052 gaacggctctatgatgaagacaatataattaagctatctcccctatatggcaatgaattatcaccctcggattcttttaagcttaaactatgacacctag 40231151  T
Q  213 aactggttaatttgtacaatatcactgtgaaaataaccacttaccatatgcttgagctaagtctgtatgaagtgacttttatctgatccagttggaaaat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40231152 aactggttaatttgtacaatatcactgtgaaaataaccacttaccatatgcttgagctaagtctgtatgaagtgacttttatctgatccagttggaaaat 40231251  T
Q  313 aaaatatactgatttgtctgaaaattataatgtaaggatgccatt 357  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  40231252 aaaatatactgatttgtctgaaaattataatgtaaggataccatt 40231296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 33540125 - 33540035
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatact-gtgagtgttttttattaagtacttatttttactatgagagccaagcctctaattt 107  Q
    |||||||||||||||||||||||||||||||| | | ||| || |||||||||| |  ||||||||||||||||||||| |||||| |||||    
T  33540125 tcaatttaaatagaagattaatcttttaaaaaaaattgtgcgt-ttttttattaggggcttatttttactatgagagccgagcctccaattt 33540035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 38190297 - 38190203
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcatag 112  Q
    ||||||||||||||| |||||||||||||||| | |||| || ||||||||||    | |||||||||| |||||| |||||||| ||||||||||    
T  38190297 tcaatttaaatagaatattaatcttttaaaaaaattgtgtgt-ttttttattagaggcctatttttactctgagagtcaagcctccaatttcatag 38190203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 19468355 - 19468253
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcataggaac 116  Q
    |||||||||||| ||||||||||||||||||| | ||||  | ||| |||||||   ||||||||||||||||||| | ||||||  |||| ||||| ||    
T  19468355 tcaatttaaataaaagattaatcttttaaaaaaattgtgcatttttattattaaaggcttatttttactatgagagtcgagcctccgattttatagggac 19468256  T
Q  117 ggc 119  Q
    |||    
T  19468255 ggc 19468253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 22317712 - 22317608
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatac--tgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcatagga 114  Q
    |||||||||||||||||| ||||||||||||| |   |||  || |||||||||| |  | ||||||||||||||||  |||||||| | |||||||||     
T  22317712 tcaatttaaatagaagatgaatcttttaaaaaaaaattgtacgttttttttattaggggcctatttttactatgagaatcaagcctccagtttcataggg 22317613  T
Q  115 acggc 119  Q
    |||||    
T  22317612 acggc 22317608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 39608207 - 39608311
Alignment:
Q  17 tcaatttaaatagaagattaatctttt--aaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcatagga 114  Q
    |||||||||||||||||||||||| ||  ||||| | |||| || |||||||||| |  | ||||||||||| ||||||| |||||| | ||| |||||     
T  39608207 tcaatttaaatagaagattaatctcttaaaaaaaaattgtgcgttttttttattaggagcctatttttactacgagagccgagcctccagttttataggg 39608306  T
Q  115 acggc 119  Q
    |||||    
T  39608307 acggc 39608311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 44767352 - 44767282
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgaga 91  Q
    ||||||||||||||||||||||||| |||||| | |||| |    |||||||||| || | ||||||||||||||    
T  44767352 tcaatttaaatagaagattaatcttataaaaaaattgtgcg----ttttattaaggacctgtttttactatgaga 44767282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 2104153 - 2104253
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcataggaac 116  Q
    |||||||||||||||||||||||||||||||| | | || || ||||||||||||  ||||||||||| ||||||||| |||||||| ||||||||| ||    
T  2104153 tcaatttaaatagaagattaatcttttaaaaaaattatg-gt-ttttttattaagggcttatttttaccatgagagccgagcctctagtttcatagggac 2104250  T
Q  117 ggc 119  Q
    |||    
T  2104251 ggc 2104253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 5869011 - 5868914
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgag-tgttttttattaagtacttatttttactatgagagccaagcctctaatttcatagg 113  Q
    |||||||||||||||||||||||||||||||| | |||| | | |||||||| | |  | ||||||||||| ||||||| |||||||| ||| |||||    
T  5869011 tcaatttaaatagaagattaatcttttaaaaaaattgtgcgtttttttttatcaggggcctatttttactacgagagccgagcctctagttttatagg 5868914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 18242173 - 18242074
Alignment:
Q  20 atttaaatagaagattaatcttttaaaaatact-gtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcataggaacgg 118  Q
    ||||||||||||||||||||||||||||| | | ||   | ||||||||||   || ||||||||||| |||||||||||||| | ||| ||||| ||||    
T  18242173 atttaaatagaagattaatcttttaaaaaaaattgtatattttttttattagagacctatttttactacgagagccaagcctccagttttatagggacgg 18242074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 26290487 - 26290518
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaa 48  Q
    ||||||||||||||||||||||||||||||||    
T  26290487 tcaatttaaatagaagattaatcttttaaaaa 26290518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 1112525 - 1112422
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtg-agtgttttttattaagtacttatttttactatgagagccaagcctctaatttcataggaa 115  Q
    |||||||||||||||||||||||||||||||| | |||| | | |||||||||||  || ||||||||||| ||||| | |||||| | ||| |||||||    
T  1112525 tcaatttaaatagaagattaatcttttaaaaaaattgtgtatttttttttattaaagacctatttttactacgagagtcgagcctccagttttataggaa 1112426  T
Q  116 cggc 119  Q
    ||||    
T  1112425 cggc 1112422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 26497883 - 26497786
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgag-tgttttttattaagtacttatttttactatgagagccaagcctctaatttcatagg 113  Q
    |||||||||||||||||||||||||||||||| | |||  | | |||||||||| |    ||||||||||||||||||| |||||||| |||||||||    
T  26497883 tcaatttaaatagaagattaatcttttaaaaaaattgtacgcttttttttattaggggtctatttttactatgagagccgagcctctagtttcatagg 26497786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 3361976 - 3362077
Alignment:
Q  19 aatttaaatagaagattaatctttt-aaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcataggaacg 117  Q
    |||||||||||||||||| |||||| ||||| | |||| || |||||||||| | ||||| |||||||||||||||| | ||||   ||||||||| |||    
T  3361976 aatttaaatagaagattagtcttttaaaaaaaattgtgcgttttttttattatggacttagttttactatgagagcctaacctccggtttcatagggacg 3362075  T
Q  118 gc 119  Q
    ||    
T  3362076 gc 3362077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 7201174 - 7201257
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctc 101  Q
    |||||||||||||||||||||||||||||||| | |||| || || |||||||   || |||||||| |||||||| | ||||||    
T  7201174 tcaatttaaatagaagattaatcttttaaaaa-attgtgcgttttatttattatagacgtatttttattatgagagtcgagcctc 7201257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 609648 - 609581
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttac 84  Q
    ||||| ||||||||||||||| |||||||||| | |||| || ||||||||||||  | |||||||||    
T  609648 tcaatataaatagaagattaaccttttaaaaaaattgtgcgttttttttattaagggcctatttttac 609581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 27246286 - 27246369
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctc 101  Q
    ||||||||||||||| |||||||||||||||| | |||| || |||||||||||||  ||||||||||||| |||| | ||||||    
T  27246286 tcaatttaaatagaaaattaatcttttaaaaa-attgtgcgttttttttattaagtgtttatttttactattagagtcgagcctc 27246369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 11245453 - 11245553
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcataggaac 116  Q
    ||||||||||||||||||||||||||| |||| | |||| || ||||||| ||    |  |||||||||||||||||  | |||| ||||||||||||||    
T  11245453 tcaatttaaatagaagattaatcttttgaaaaaattgtgtgttttttttactagaggccaatttttactatgagagctgaacctccaatttcataggaac 11245552  T
Q  117 g 117  Q
    |    
T  11245553 g 11245553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 6087078 - 6086973
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcataggaac 116  Q
    |||||||||||| ||||||||| ||||||||| | |||| |  |||||||||| | || ||||||||||| ||||||| |||||| | ||| ||||||||    
T  6087078 tcaatttaaatataagattaatattttaaaaa-attgtgcgc-ttttttattagggacctatttttactacgagagccgagcctccagttttataggaac 6086981  T
Q  117 ggctctat 124  Q
    ||||||||    
T  6086980 ggctctat 6086973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 16061482 - 16061380
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcataggaac 116  Q
    ||||||||||||||||||| |||||||||||| | |||| || ||||||||||    | ||||||||||| ||||||| |||||| | ||| ||||| ||    
T  16061482 tcaatttaaatagaagattgatcttttaaaaaaattgtgcgttttttttattagaggcctatttttactacgagagccgagcctccagttttatagggac 16061383  T
Q  117 ggc 119  Q
    |||    
T  16061382 ggc 16061380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 6166446 - 6166537
Alignment:
Q  19 aatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcata 111  Q
    |||||||||||||||||||||||||||||| | || | || ||||||||||    | |||||||||||| ||| ||||||||| |||||||||    
T  6166446 aatttaaatagaagattaatcttttaaaaacattgagtgt-ttttttattagaagcctatttttactataagaaccaagcctccaatttcata 6166537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 18886236 - 18886338
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcataggaac 116  Q
    |||||||||||||||||||||||||||||||| | |||  |  |||||||||| | |  |||||||||||  |||| | |||||||| ||| ||||| ||    
T  18886236 tcaatttaaatagaagattaatcttttaaaaaaattgtacgctttttttattagggatctatttttactacaagagtcgagcctctagttttatagggac 18886335  T
Q  117 ggc 119  Q
    |||    
T  18886336 ggc 18886338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 32728004 - 32727973
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaa 48  Q
    ||||||||||||||||||||||||||||||||    
T  32728004 tcaatttaaatagaagattaatcttttaaaaa 32727973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 42624825 - 42624913
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaattt 107  Q
    |||||||||||||||||||||||||||||||| | | ||  | |||||||||||  || |||||| |||| ||||||||||||||||||||    
T  42624825 tcaatttaaatagaagattaatcttttaaaaa-attatgcat-ttttttattaaaaacctattttaactacgagagccaagcctctaattt 42624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 54561170 - 54561252
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctc 101  Q
    |||||||||||||||||||||||||| ||||| | ||||  | |||||||||||  |  ||||||||| ||||||||| ||||||    
T  54561170 tcaatttaaatagaagattaatctttaaaaaa-attgtgcat-ttttttattaaagaactatttttacaatgagagccgagcctc 54561252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 7380404 - 7380303
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctctaatttcataggaac 116  Q
    |||||||||||||||||||||||||||||||| | ||||  | |||||||||| |  | ||||||||||| ||||| | |||||| ||||| ||||| ||    
T  7380404 tcaatttaaatagaagattaatcttttaaaaaaattgtgcat-ttttttattaggggcctatttttactacgagagacgagcctccaattttatagggac 7380306  T
Q  117 ggc 119  Q
    |||    
T  7380305 ggc 7380303  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 50509855 - 50509931
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagcc 94  Q
    ||||||||||||||| |||||||||||||||| | |||| |  |||||||||| |  | |||||||||||||||||||    
T  50509855 tcaatttaaatagaaaattaatcttttaaaaaaattgtg-gatttttttattaggggcctatttttactatgagagcc 50509931  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 24892040 - 24892009
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaa 48  Q
    ||||||||||||||||||||||||||||||||    
T  24892040 tcaatttaaatagaagattaatcttttaaaaa 24892009  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 26687723 - 26687692
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaa 48  Q
    ||||||||||||||||||||||||||||||||    
T  26687723 tcaatttaaatagaagattaatcttttaaaaa 26687692  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 21466917 - 21466818
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgtttttt-----attaagtacttatttttactatgagagccaagcctctaatttcata 111  Q
    ||||| |||| ||||||||||||||||||||| | |||| || ||||||     ||||||  | |||||||||||||||||||||||||| | |||||||    
T  21466917 tcaatataaacagaagattaatcttttaaaaaaattgtgcgtttttttttttttattaagggcctatttttactatgagagccaagcctccagtttcata 21466818  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 13751472 - 13751387
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgag-tgttttttattaagtacttatttttactatgagagccaagcctc 101  Q
    ||||||||||||||||||||||||||| |||| | |||| | | ||||||| || |  | ||||||||||||||||| ||||||||    
T  13751472 tcaatttaaatagaagattaatcttttcaaaaaattgtgcgtttttttttactaggagcctatttttactatgagagtcaagcctc 13751387  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 44004348 - 44004266
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaatactgtgagtgttttttattaagtacttatttttactatgagagccaagcctc 101  Q
    ||||||||||||||||||| |||||||||||| | |||| || |||||||||| | |  | ||||||||||||||||| ||||||    
T  44004348 tcaatttaaatagaagatttatcttttaaaaaaattgtg-gt-ttttttattagggatctgtttttactatgagagccgagcctc 44004266  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 9946783 - 9946814
Alignment:
Q  17 tcaatttaaatagaagattaatcttttaaaaa 48  Q
    ||||||||||||||||||||||||||||||||    
T  9946783 tcaatttaaatagaagattaatcttttaaaaa 9946814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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