View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_13 (Length: 367)
Name: NF1461_low_13
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 356
Target Start/End: Complemental strand, 42159427 - 42159072
Alignment:
| Q |
14 |
ttctacttataggaaactttagtcgctatagacgaagcactttaaaaatcatttcagaaagaaaaaa-------------ctaatctactatatatagta |
100 |
Q |
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| T |
42159427 |
ttctacttataggaaactttagtcgctatagacgaagcactttaaaaatcatttcagaaagaaaaaaaattatatacatactaatctactatatatagta |
42159328 |
T |
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| Q |
101 |
agaagatatatatgttatctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagtt |
200 |
Q |
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| T |
42159327 |
agaagatatatatgttatctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagtt |
42159228 |
T |
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| Q |
201 |
gggcgtcgacgagtttccgggacgtatggacggcaacagcagcggccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagta |
300 |
Q |
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| T |
42159227 |
gggcgtcgacgagtttccgggacgtatggacggcaacagcagcgtccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagta |
42159128 |
T |
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| Q |
301 |
tcacctcacttgggcagccattgagcggttgcctacttttgagcgtatgagaaaag |
356 |
Q |
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| T |
42159127 |
tcacctcacttgggcagccattgagcggttgcctacttttgagcgtatgagaaaag |
42159072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 118 - 356
Target Start/End: Complemental strand, 42180284 - 42180046
Alignment:
| Q |
118 |
tctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagttgggcgtcgacgagtttc |
217 |
Q |
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| T |
42180284 |
tctgtttgagaaactagttagtaaaatggcatccgtattggcaggggatgaggtgacaatatcaacaagtagtagtcggagttggaagtcgatgagtttc |
42180185 |
T |
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| Q |
218 |
cgggacgtatggacggcaacagcagcggccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagtatcacctcacttgggcag |
317 |
Q |
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| T |
42180184 |
caggacatatggacagcaacagcaggggcagttcccgacgtgttcgagcggagtgatcgacacacacaggaggatgacgagtatcacctcacctgggcag |
42180085 |
T |
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| Q |
318 |
ccattgagcggttgcctacttttgagcgtatgagaaaag |
356 |
Q |
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| T |
42180084 |
ccattgagcggttgcctactttagagagaatgagaaaag |
42180046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 123 - 356
Target Start/End: Complemental strand, 42146992 - 42146777
Alignment:
| Q |
123 |
ttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagttgggcgtcgacgagtttccggga |
222 |
Q |
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| T |
42146992 |
ttgagaaattagttagtaaaatggcatcggtaatggcaagggatgaggtgacaatatcaacaagcagtcgtcg---------------gagtttccggga |
42146908 |
T |
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| Q |
223 |
cgtatggacggcaacagcagcggccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagtatcacctcacttgggcagccatt |
322 |
Q |
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| T |
42146907 |
gatgtggccagtgacagcagctgc---tccggacgtgttcgagcggagtgatcgacacacacaagaggatgatgagtatcacctcacttgggtagccatt |
42146811 |
T |
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| Q |
323 |
gagcggttgcctacttttgagcgtatgagaaaag |
356 |
Q |
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| T |
42146810 |
gagcggctgcctacttttgagagaatgagaaaag |
42146777 |
T |
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