View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1461_low_16 (Length: 300)

Name: NF1461_low_16
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1461_low_16
NF1461_low_16
[»] chr7 (6 HSPs)
chr7 (9-167)||(7543895-7544053)
chr7 (9-296)||(19407683-19407958)
chr7 (193-297)||(26449548-26449652)
chr7 (210-300)||(33191279-33191369)
chr7 (23-133)||(29132251-29132362)
chr7 (23-63)||(16099839-16099879)
[»] chr3 (9 HSPs)
chr3 (9-161)||(29346977-29347129)
chr3 (161-296)||(29346803-29346939)
chr3 (10-156)||(35526351-35526497)
chr3 (216-296)||(35526596-35526676)
chr3 (198-297)||(51524871-51524970)
chr3 (201-299)||(16893079-16893177)
chr3 (16-63)||(49106832-49106879)
chr3 (211-300)||(31067176-31067266)
chr3 (219-261)||(8357503-8357545)
[»] chr1 (12 HSPs)
chr1 (9-158)||(13061751-13061900)
chr1 (160-300)||(13061940-13062081)
chr1 (201-297)||(50903502-50903598)
chr1 (223-300)||(41035067-41035144)
chr1 (209-297)||(49491908-49491995)
chr1 (201-300)||(3374304-3374403)
chr1 (210-300)||(19394156-19394246)
chr1 (201-297)||(17114734-17114830)
chr1 (16-146)||(44163556-44163688)
chr1 (210-259)||(39332376-39332425)
chr1 (192-284)||(14344072-14344164)
chr1 (7-44)||(9094353-9094390)
[»] chr5 (10 HSPs)
chr5 (9-161)||(19215560-19215712)
chr5 (7-146)||(32278496-32278637)
chr5 (189-294)||(19215389-19215494)
chr5 (172-297)||(788265-788391)
chr5 (192-297)||(36868296-36868401)
chr5 (189-267)||(32278714-32278792)
chr5 (17-158)||(788078-788217)
chr5 (208-254)||(36150672-36150718)
chr5 (224-293)||(15188071-15188140)
chr5 (23-92)||(36868515-36868583)
[»] chr8 (6 HSPs)
chr8 (7-156)||(3801149-3801298)
chr8 (173-297)||(29369107-29369232)
chr8 (192-297)||(27786798-27786903)
chr8 (209-300)||(8831250-8831341)
chr8 (9-68)||(29369348-29369407)
chr8 (198-297)||(36206437-36206536)
[»] chr6 (7 HSPs)
chr6 (189-297)||(25167847-25167955)
chr6 (189-297)||(3949338-3949446)
chr6 (9-92)||(3949584-3949667)
chr6 (208-297)||(10990028-10990117)
chr6 (23-92)||(5605472-5605541)
chr6 (210-293)||(4263398-4263481)
chr6 (162-253)||(13535133-13535225)
[»] chr4 (7 HSPs)
chr4 (200-300)||(37050001-37050102)
chr4 (208-293)||(24239870-24239955)
chr4 (209-300)||(19852485-19852576)
chr4 (9-68)||(7492271-7492330)
chr4 (209-300)||(16593797-16593888)
chr4 (16-146)||(37050195-37050326)
chr4 (9-68)||(7500322-7500381)
[»] chr2 (9 HSPs)
chr2 (173-297)||(31092320-31092445)
chr2 (189-297)||(18811713-18811821)
chr2 (192-297)||(37344623-37344728)
chr2 (208-299)||(8413844-8413935)
chr2 (192-297)||(14296269-14296374)
chr2 (208-300)||(13502683-13502775)
chr2 (7-63)||(37344844-37344900)
chr2 (14-68)||(31092561-31092615)
chr2 (192-261)||(18693141-18693210)
[»] scaffold0531 (1 HSPs)
scaffold0531 (208-300)||(10260-10352)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 7543895 - 7544053
Alignment:
Q  9 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||| ||    
T  7543895 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgtaagaggtgtcaaatacagccactgaacag 7543994  T
Q  109 aaaactagtcaaactatgaccattctaggccaaacaacagctacaagactgccatctat 167  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  7543995 aaaactagtcaaactatgaccattctaggccaaacaacagctaaaagactgccctctat 7544053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 19407683 - 19407958
Alignment:
Q  9 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 108  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||| || ||| |||||| ||| |||||| |||||||||| |||  ||||||| ||    
T  19407683 cagagatacatagtgtaaaacctatgaaaagagaaaccgggtttatccgaaaaaaggaaaggccctgatgaaacaggtgtcaaagacaaccattgaacag 19407782  T
Q  109 aaaactagtcaaactatgaccattctaggccaaacaacagctacaagactgccatctatacttttgcaactggaccaa-ttttctgtatttgtcaaggcg 207  Q
    ||||||||| | | || ||||||||| |||||||||||||||| |||            |||  ||||| |||| ||| | | |||||| ||  | ||||    
T  19407783 aaaactagttagatta-gaccattcttggccaaacaacagctaaaag------------actaatgcaattggaacaactatactgtatctgctagggcg 19407869  T
Q  208 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctt 296  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  19407870 gctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacctgcttcttcttctt 19407958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 26449548 - 26449652
Alignment:
Q  193 gtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttct 292  Q
    |||| |||| |||| | ||||||||||| ||||||| |||| ||||||||| |||||||| | ||||||  |||| ||||||||||||||||||||||||    
T  26449548 gtatatgtcgaggcagttttggaggtacccttttggacacgagtcctcattccggctgagctgaagctagtaggcttcactctgttcacctgcttcttct 26449647  T
Q  293 tcttt 297  Q
     ||||    
T  26449648 gcttt 26449652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 33191369 - 33191279
Alignment:
Q  210 tttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    |||| |||||| ||| ||||||||||||||||| || |||||||||||||||  |||| ||||| || |||| || ||||||||| |||||    
T  33191369 tttgaaggtacccttctgggcacgggtcctcatgtcagctgagttaaagctagcaggcttcactttgctcacatgtttcttcttcattttc 33191279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 29132251 - 29132362
Alignment:
Q  23 gtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaata-gaaaactagtcaaa 121  Q
    ||||||| |||||||||| ||||||  |||||||||||||| |||| |  ||||  |||||||||||||| ||   ||||| | |  |||||||||||||    
T  29132251 gtaaaacttatgaaaagaaaaaccgaatctatcccaagaaaggaaaagttctaaaaaaagaggtgtcaaagacgaccattgtacataaaaactagtcaaa 29132350  T
Q  122 ctatgaccattc 133  Q
     |||||||||||    
T  29132351 ttatgaccattc 29132362  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 16099879 - 16099839
Alignment:
Q  23 gtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 63  Q
    |||||||||||| ||||||||||||| |||||||| |||||    
T  16099879 gtaaaacctatggaaagagaaaccggatctatcccgagaaa 16099839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 29347129 - 29346977
Alignment:
Q  9 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||| |     
T  29347129 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaaaggcctaatgaaagaggtgtcaaatacaaccattgaacat 29347030  T
Q  109 aaaactagtcaaactatgaccattctaggccaaacaacagctacaagactgcc 161  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||||||||    
T  29347029 aaaactagtcaaactatgaccattccaggccaaacaacaactaaaagactgcc 29346977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 296
Target Start/End: Complemental strand, 29346939 - 29346803
Alignment:
Q  161 catctatacttttgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagc 259  Q
    |||||||||| |||||| |||||||| | || ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||    
T  29346939 catctatactcttgcaattggaccaactattatgtatctgtcaaggcggctttggaggtactcttttgtgcacgggtcctcattccggctaagttaaagc 29346840  T
Q  260 taaaaggcatcactctgttcacctgcttcttcttctt 296  Q
    || ||||||||||  ||||||||||||||||||||||    
T  29346839 tataaggcatcacgttgttcacctgcttcttcttctt 29346803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 35526351 - 35526497
Alignment:
Q  10 agagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaataga 109  Q
    |||||||||||||||||||| |||||||||||||||| |  |||| |||||||| |||| |||||||||||| |||||||||| |||  ||||| | | |    
T  35526351 agagatacatagagtaaaacttatgaaaagagaaaccagagctattccaagaaaggaaatggcctaatgaaacaggtgtcaaaaacaaccattgtacata 35526450  T
Q  110 aaactagtcaaactatgaccattctaggccaaacaacagctacaaga 156  Q
    |||||||||||| |||||||||  | |||| ||||| ||||| ||||    
T  35526451 aaactagtcaaattatgaccatgtttggcccaacaatagctaaaaga 35526497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 35526596 - 35526676
Alignment:
Q  216 ggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctt 296  Q
    ||||| |||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  35526596 ggtacccttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttcttctt 35526676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 51524970 - 51524871
Alignment:
Q  198 tgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttt 297  Q
    ||||||||  ||||||||||  | |||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | | |||||||||||||||||||    
T  51524970 tgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgcacctgcttcttcttcttt 51524871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 16893177 - 16893079
Alignment:
Q  201 caaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttttt 299  Q
    |||||| |||||||||| || |||||| ||||||||||||||| |||||||||| || |||  |||| ||||| |||||||||||||||| | ||||||    
T  16893177 caaggcagctttggaggcacccttttgagcacgggtcctcattccggctgagttgaacctagtaggcttcactttgttcacctgcttcttttgcttttt 16893079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 49106832 - 49106879
Alignment:
Q  16 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 63  Q
    |||||| | |||||||||||||||||||||||| ||||||||||||||    
T  49106832 acatagtgaaaaacctatgaaaagagaaaccggatctatcccaagaaa 49106879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 31067266 - 31067176
Alignment:
Q  211 ttggaggtactcttttgggcacgggtcctcatttcgg-ctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    |||||| ||| ||||| |||||||||||||||| | | ||||||||||||||  | || ||||| ||| ||| ||||||||||||||||||    
T  31067266 ttggagttacacttttaggcacgggtcctcattcccgactgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttttc 31067176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 261
Target Start/End: Original strand, 8357503 - 8357545
Alignment:
Q  219 actcttttgggcacgggtcctcatttcggctgagttaaagcta 261  Q
    |||||||||| |||| |||||||||| ||||||||||||||||    
T  8357503 actcttttggacacgagtcctcattttggctgagttaaagcta 8357545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 13061751 - 13061900
Alignment:
Q  9 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 108  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||  ||||||| ||    
T  13061751 cagagatacatagagtaaaacctatgaaaagagaaaccgagtctatcccaagaaatgaaaaggcctaatgaaagaggtgtcaaatacaaccattgaacag 13061850  T
Q  109 aaaactagtcaaactatgaccattctaggccaaacaacagctacaagact 158  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  13061851 aaaactagtcaaactacgaccattctaggccaaacaacagctaaaagact 13061900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 160 - 300
Target Start/End: Original strand, 13061940 - 13062081
Alignment:
Q  160 ccatctatacttttgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaag 258  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  13061940 ccatctatacttttgcaattggaccaattattctgtatttgtcaaggcggctttggaggtactcttttcagcacgggtcctcatttcggctgagttaaag 13062039  T
Q  259 ctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  13062040 ctaaaaggcatcactttgttcacctgcttcttcttctttttc 13062081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 50903502 - 50903598
Alignment:
Q  201 caaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttt 297  Q
    |||| |||||||||||||||   ||||||||||||||||||||||||||||||| ||||||  |||| ||||| |||||||||||||||||| ||||    
T  50903502 caagtcggctttggaggtaccgctttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgttcacctgcttcttctgcttt 50903598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 41035067 - 41035144
Alignment:
Q  223 ttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| |||   | ||||||||||||||||||||||||    
T  41035067 ttttgggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattcacctgcttcttcttctttttc 41035144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 49491908 - 49491995
Alignment:
Q  209 ctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttt 297  Q
    |||||||||||| |||||||||||||||||||||| |||||||||| ||||||  |||| ||||| ||||||| |||||||||| ||||    
T  49491908 ctttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtaggc-tcactttgttcacatgcttcttctgcttt 49491995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 3374403 - 3374304
Alignment:
Q  201 caaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    |||||| ||||||||| ||| |||||||||||  ||||||||| ||||||||||||| |||   ||| ||||| ||||||| ||||||||||||||||||    
T  3374403 caaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaatctagccggcttcactttgttcacttgcttcttcttctttttc 3374304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 19394156 - 19394246
Alignment:
Q  210 tttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    |||| |||||| |||||||||||||||||||||| | ||| ||||||||| | ||||| ||||| || |||| ||||||||||||||||||    
T  19394156 tttgaaggtacccttttgggcacgggtcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgcttcttcttctttttc 19394246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 17114734 - 17114830
Alignment:
Q  201 caaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttt 297  Q
    |||||| ||||||||||||| ||||||| || |||||||||||  ||| ||||||||||||  |||| ||||| ||||||| || ||||||||||||    
T  17114734 caaggccgctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcactttgttcacatgtttcttcttcttt 17114830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 44163556 - 44163688
Alignment:
Q  16 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaata-gaaaact 114  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| | || | ||| | ||| || |||||||| |||| ||  ||| |  ||||||    
T  44163556 acatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaaggtaatgccctgaggaacgatgtgtcaaagacagtcaaagaacataaaaact 44163655  T
Q  115 agtc-aaactatgaccattctaggccaaacaac 146  Q
    |||| ||| |||||||||||| |||||||||||    
T  44163656 agtctaaagtatgaccattcttggccaaacaac 44163688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 39332425 - 39332376
Alignment:
Q  210 tttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagc 259  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  39332425 tttgaaggtacccttttgggcacgggtcctcatttcggctgagttaaagc 39332376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 284
Target Start/End: Complemental strand, 14344164 - 14344072
Alignment:
Q  192 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctg 284  Q
    ||||| ||||||| || |||||||||||| ||||||| |||| ||| ||||| ||  ||||||||| ||| ||||| ||||| ||||||||||    
T  14344164 tgtatctgtcaagtcgactttggaggtacccttttggacacgagtcatcattccgattgagttaaaactagaaggcttcactttgttcacctg 14344072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 9094353 - 9094390
Alignment:
Q  7 atcagagatacatagagtaaaacctatgaaaagagaaa 44  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  9094353 atcagagttacatagtgtaaaacctatgaaaagagaaa 9094390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 19215712 - 19215560
Alignment:
Q  9 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatag 108  Q
    ||||||| |||||| ||||||||||||||||||||||  | ||||| |||||||| |||||| |||||||||| |||||||||| |||  ||||  | ||    
T  19215712 cagagatgcatagactaaaacctatgaaaagagaaactagatctattccaagaaaggaaaggacctaatgaaataggtgtcaaagacaaccattatacag 19215613  T
Q  109 aaaactagtcaaactatgaccattctaggccaaacaacagctacaagactgcc 161  Q
    ||||||||||||| |||| |  |||| |||||||||||||||| |||||||||    
T  19215612 aaaactagtcaaattatgtctgttcttggccaaacaacagctaaaagactgcc 19215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 32278496 - 32278637
Alignment:
Q  7 atcagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaat 106  Q
    |||||||  |||||| |||||||||||||||||||||||||| |||||||||||||||| || | ||||| ||| ||||||||||| |||  || ||||     
T  32278496 atcagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaaaggaatgtcctaaggaacgaggtgtcaaagacaaccaatgaac 32278595  T
Q  107 ag-aaaactagtc-aaactatgaccattctaggccaaacaac 146  Q
    || |||||||||| ||| |||||||||||| |||||||||||    
T  32278596 agaaaaactagtcaaaagtatgaccattcttggccaaacaac 32278637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 294
Target Start/End: Complemental strand, 19215494 - 19215389
Alignment:
Q  189 ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttc 288  Q
    |||||||| || |||||| | |||| |||||| ||||||||| ||||||||||||  |||||||||||||||| | ||||||||| ||||||||||||||    
T  19215494 ttctgtatctgccaaggcagttttgaaggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttcacctgcttc 19215395  T
Q  289 ttcttc 294  Q
    ||||||    
T  19215394 ttcttc 19215389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 297
Target Start/End: Original strand, 788265 - 788391
Alignment:
Q  172 ttgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatc 270  Q
    |||||| || ||||||| |||| ||| |||||||||||||||||||| || |||||||||||| ||||||||  || ||||||||||| || ||||| ||    
T  788265 ttgcaattgaaccaattattctatatatgtcaaggcggctttggaggaacccttttgggcacgagtcctcatagcgtctgagttaaagttagaaggcttc 788364  T
Q  271 actctgttcacctgcttcttcttcttt 297  Q
    | | |||||| ||||||||||||||||    
T  788365 attttgttcatctgcttcttcttcttt 788391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 36868401 - 36868296
Alignment:
Q  192 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttc 291  Q
    ||||| ||||||||  |||||||||| || ||||||| |||||| ||||||| ||||||||||||||||| ||||| ||||| | ||||| |||||||||    
T  36868401 tgtatctgtcaaggtagctttggaggaacccttttggacacgggccctcattccggctgagttaaagctagaaggcttcactttattcacttgcttcttc 36868302  T
Q  292 ttcttt 297  Q
    ||||||    
T  36868301 ttcttt 36868296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 32278714 - 32278792
Alignment:
Q  189 ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggc 267  Q
    |||||||| ||||||||||||||||||||||| |||||||| |||  || ||||| ||||||||||||| ||| |||||    
T  32278714 ttctgtatctgtcaaggcggctttggaggtacccttttgggaacgaatcttcattccggctgagttaaaactagaaggc 32278792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 788078 - 788217
Alignment:
Q  17 catagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatagaaaactag 116  Q
    ||||| |||||| |||| ||||||||||  |  ||||| |||||||| |||||  | ||| ||||||||||||||| |||  |||||  || ||||||||    
T  788078 catagtgtaaaatctataaaaagagaaaatgaatctattccaagaaaggaaagaccttaaggaaagaggtgtcaaagacaaccattg--taaaaaactag 788175  T
Q  117 tcaaactatgaccattctaggccaaacaacagctacaagact 158  Q
     |||| |||||||||||  |||||||| ||||||| ||||||    
T  788176 acaaattatgaccattcatggccaaaccacagctaaaagact 788217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 36150672 - 36150718
Alignment:
Q  208 gctttggaggtactcttttgggcacgggtcctcatttcggctgagtt 254  Q
    ||||||||||||  |||||||||||| ||||||||| ||||||||||    
T  36150672 gctttggaggtatccttttgggcacgagtcctcattccggctgagtt 36150718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 15188140 - 15188071
Alignment:
Q  224 tttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttctt 293  Q
    ||||||||||||||||||||   |||||||||||||||  |||| ||||| || |||  |||||||||||    
T  15188140 tttgggcacgggtcctcattctagctgagttaaagctatcaggcttcactttgctcatatgcttcttctt 15188071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 36868583 - 36868515
Alignment:
Q  23 gtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaa 92  Q
    |||| ||||||||||||| ||| ||| |||||||||||||| |||| | ||||| |||| ||||||||||    
T  36868583 gtaagacctatgaaaagaaaaatcggatctatcccaagaaaggaaaagacctaa-gaaaaaggtgtcaaa 36868515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 3801298 - 3801149
Alignment:
Q  7 atcagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaat 106  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||||||| |||||| | |||| ||||| ||||||||||||||| |||  | |   |     
T  3801298 atcagagatacatggaataaaacctatgaaaagagaaaccggatctatcctaagaaaggcaaggacctaaggaaagaggtgtcaaagacaaccgtattac 3801199  T
Q  107 agaaaactagtcaaactatgaccattctaggccaaacaacagctacaaga 156  Q
    | |||||| |||||| |||||||||||| |||||||||||||||| ||||    
T  3801198 ataaaactggtcaaattatgaccattcttggccaaacaacagctaaaaga 3801149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 29369232 - 29369107
Alignment:
Q  173 tgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatca 271  Q
    ||||| |||||||| | |||||||| || |||||||| |||||| |||  ||||||||||||||||||||||  |||| ||||||||||  |||||||||    
T  29369232 tgcaattggaccaactattctgtatctgccaaggcggatttggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggcatca 29369133  T
Q  272 ctctgttcacctgcttcttcttcttt 297  Q
    || | ||||| |||||||||||||||    
T  29369132 ctttattcacgtgcttcttcttcttt 29369107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 27786798 - 27786903
Alignment:
Q  192 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttc 291  Q
    ||||| ||||||||  |||||||||| ||  |||||||||||| |||||||| ||||||||||||||||| ||||| ||||| | |||| |||||| |||    
T  27786798 tgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattccggctgagttaaagctagaaggcttcactttattcatctgcttattc 27786897  T
Q  292 ttcttt 297  Q
    ||||||    
T  27786898 ttcttt 27786903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 8831250 - 8831341
Alignment:
Q  209 ctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    |||||||| ||| |||||| ||||||||||||||| |||||||||||||||||  |||| ||||| ||||||  ||||||||||||| ||||    
T  8831250 ctttggagttacacttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcactttgttcatgtgcttcttcttctctttc 8831341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 29369407 - 29369348
Alignment:
Q  9 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaa 68  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||    
T  29369407 cagagatacatagagtaaaacctatgaaaagagaatccggatcaatcccaagaaaggaaa 29369348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 297
Target Start/End: Original strand, 36206437 - 36206536
Alignment:
Q  198 tgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttt 297  Q
    |||||||||  ||||||||| |||||||| |||||| ||||||||| || || ||||||||||| ||||| ||||| | ||||  |||||||||||||||    
T  36206437 tgtcaaggcaactttggaggaactcttttaggcacgagtcctcattccgactaagttaaagctagaaggcttcactttattcatttgcttcttcttcttt 36206536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 297
Target Start/End: Complemental strand, 25167955 - 25167847
Alignment:
Q  189 ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttc 288  Q
    |||||||| ||||||||||||||||||||||| |||||||||| | |||||| || ||||||||||||| ||| ||||| ||||| ||||||| || |||    
T  25167955 ttctgtatctgtcaaggcggctttggaggtacccttttgggcatgagtcctctttccggctgagttaaaactagaaggcttcactttgttcacatgtttc 25167856  T
Q  289 ttcttcttt 297  Q
    |||||||||    
T  25167855 ttcttcttt 25167847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 297
Target Start/End: Complemental strand, 3949446 - 3949338
Alignment:
Q  189 ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttc 288  Q
    ||||| || ||||||||||||||||||||||| ||| ||  |||| |||||||||  |||| ||||||| |||||| || ||||| | |||||||| |||    
T  3949446 ttctgcatctgtcaaggcggctttggaggtacccttctgaacacgagtcctcattctggctcagttaaaactaaaaagcttcactttattcacctgtttc 3949347  T
Q  289 ttcttcttt 297  Q
    |||||||||    
T  3949346 ttcttcttt 3949338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 3949667 - 3949584
Alignment:
Q  9 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaa 92  Q
    |||||| |||||| |||||||||||||||||||||||||| ||||||| |||||| | || | ||||| ||| |||||||||||    
T  3949667 cagagacacatagtgtaaaacctatgaaaagagaaaccggatctatcctaagaaagggaatgacctaaggaacgaggtgtcaaa 3949584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 297
Target Start/End: Complemental strand, 10990117 - 10990028
Alignment:
Q  208 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttt 297  Q
    |||||||||| || |||||| ||||| ||||||||||||||| ||||||||||| ||||  ||||| ||||| | |||| ||||||||||    
T  10990117 gctttggaggaacccttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattcactttgttctcttgctgcttcttcttt 10990028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 5605472 - 5605541
Alignment:
Q  23 gtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaa 92  Q
    |||||||||||||||||| ||  ||||| ||||| |||||| |||||| ||||| |||||||||||||||    
T  5605472 gtaaaacctatgaaaagaaaagtcgggtatatccaaagaaaggaaaggccctaaagaaagaggtgtcaaa 5605541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 293
Target Start/End: Original strand, 4263398 - 4263481
Alignment:
Q  210 tttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttctt 293  Q
    |||||||| || |||||| ||||||||||||||| ||||||||||||| |||  |||| ||| | |||| || |||||||||||    
T  4263398 tttggaggaacccttttgagcacgggtcctcattccggctgagttaaaactagcaggcttcattttgtttacatgcttcttctt 4263481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 13535225 - 13535133
Alignment:
Q  162 atctatacttttgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagt 253  Q
    |||||||||||||||| || ||||| | || ||||  || |||| | ||||||||| || || |||||||| ||||||||||| |||||||||    
T  13535225 atctatacttttgcaaatgaaccaactattatgtagctgccaagacagctttggagttaatcctttgggcaagggtcctcattccggctgagt 13535133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 300
Target Start/End: Complemental strand, 37050102 - 37050001
Alignment:
Q  200 tcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagcta-aaaggcatcactctgttcacctgcttcttcttctttt 298  Q
    |||| |||||||||||||||| |||||||||||| ||||||||| ||||||||||||| ||| |||||| ||||| ||||||| || |||||||||||||    
T  37050102 tcaaagcggctttggaggtacccttttgggcacgagtcctcattccggctgagttaaaactagaaaggcttcactttgttcacatgtttcttcttctttt 37050003  T
Q  299 tc 300  Q
    ||    
T  37050002 tc 37050001  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 24239870 - 24239955
Alignment:
Q  208 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttctt 293  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||  |||| ||||| | ||||||| |||||||||    
T  24239870 gcttttgaggtacccttttgggcacgggtcctcattccggctgagttaaagctagtaggcttcactttattcacctacttcttctt 24239955  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 19852576 - 19852485
Alignment:
Q  209 ctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    |||||||| ||||||||||||||||||| |||||| ||| ||||||||| |||  |||| ||||| ||| ||| ||||||||||||||||||    
T  19852576 ctttggagttactcttttgggcacgggttctcattccgggtgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttc 19852485  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 7492330 - 7492271
Alignment:
Q  9 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaa 68  Q
    ||||||||||||||||||||||||| ||||||||| |||| || ||||||||||| ||||    
T  7492330 cagagatacatagagtaaaacctattaaaagagaatccggatcaatcccaagaaaggaaa 7492271  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 300
Target Start/End: Original strand, 16593797 - 16593888
Alignment:
Q  209 ctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    |||||| | ||||||||||||||||||| |||||| ||||| ||||||| |||  |||| ||||| ||| ||| ||||||| ||||||||||    
T  16593797 ctttggcgttactcttttgggcacgggttctcattccggctaagttaaaactagcaggcctcactttgtgcacgtgcttctacttctttttc 16593888  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 37050326 - 37050195
Alignment:
Q  16 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaagggcctaatgaaagaggtgtcaaatacagacattgaatagaaaacta 115  Q
    |||||| ||||||||||||||||||||||| || |||||||||| ||| | || | || || ||| ||||| ||||| |||  || |||| | |||||||    
T  37050326 acatagtgtaaaacctatgaaaagagaaactggatctatcccaataaagggaatgtccaaaggaacgaggtatcaaagacaaccaatgaacaaaaaacta 37050227  T
Q  116 gtc-aaactatgaccattctaggccaaacaac 146  Q
    ||| ||| ||||||||| || |||||||||||    
T  37050226 gtcaaaagtatgaccatacttggccaaacaac 37050195  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 7500381 - 7500322
Alignment:
Q  9 cagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaa 68  Q
    |||| |||||||||||||||||||| ||||||||| |||| || ||||||||||| ||||    
T  7500381 cagaaatacatagagtaaaacctattaaaagagaatccggatcaatcccaagaaaggaaa 7500322  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 297
Target Start/End: Complemental strand, 31092445 - 31092320
Alignment:
Q  173 tgcaactggaccaatt-ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatca 271  Q
    ||||| |||||||| | |||||||| || |||| || |||||||||||| |||||||||||| ||||||||| ||||||||||||| ||| |||||||||    
T  31092445 tgcaaatggaccaactattctgtatctggcaagacgactttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcatca 31092346  T
Q  272 ctctgttcacctgcttcttcttcttt 297  Q
    || | ||||| || ||||||||||||    
T  31092345 ctttattcacgtgattcttcttcttt 31092320  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 18811713 - 18811821
Alignment:
Q  189 ttctgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttc 288  Q
    |||||||| ||||||||  ||||||||||  | |||||||||||||||||||||| ||||||||||||||||| || || ||||| | | ||||||||||    
T  18811713 ttctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaagcttcactttatgcacctgcttc 18811812  T
Q  289 ttcttcttt 297  Q
    |||||||||    
T  18811813 ttcttcttt 18811821  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 37344728 - 37344623
Alignment:
Q  192 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttc 291  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||  |||||||| ||||||||||||| ||| || |  ||||| |||||||||| ||||||    
T  37344728 tgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgagttaaaactagaatgattcactttgttcacctgtttcttc 37344629  T
Q  292 ttcttt 297  Q
    ||||||    
T  37344628 ttcttt 37344623  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 8413844 - 8413935
Alignment:
Q  208 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttcttttt 299  Q
    ||||||||||||| |||||| ||||||||||||||| ||| |||||| ||||||  |||| ||||| ||||| |||||||||||| ||||||    
T  8413844 gctttggaggtacccttttgagcacgggtcctcattccggttgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttttt 8413935  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 14296269 - 14296374
Alignment:
Q  192 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttc 291  Q
    ||||| || ||||||  |||||||||||| ||||||| |||| || |||||| |||||||||||||||||  |||| ||| | |||||| ||||||||||    
T  14296269 tgtatctgccaaggcatctttggaggtacccttttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttgttcatctgcttcttc 14296368  T
Q  292 ttcttt 297  Q
    ||||||    
T  14296369 ttcttt 14296374  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 13502775 - 13502683
Alignment:
Q  208 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    ||||||||| |||||||||||||||||  |||||||  ||||||||||||||||  || | |  || |||||||  |||||||||||||||||    
T  13502775 gctttggagttactcttttgggcacggaccctcattctggctgagttaaagctagcagaccttcctttgttcacgagcttcttcttctttttc 13502683  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 37344900 - 37344844
Alignment:
Q  7 atcagagatacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaa 63  Q
    |||||||  |||||| |||||||||| ||||||||||| ||| ||||||||||||||    
T  37344900 atcagagtcacatagtgtaaaacctacgaaaagagaaatcggatctatcccaagaaa 37344844  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 31092615 - 31092561
Alignment:
Q  14 atacatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaa 68  Q
    |||||||||||||||||||||||||||||| |  | || ||||||||||| ||||    
T  31092615 atacatagagtaaaacctatgaaaagagaatctagatcaatcccaagaaaggaaa 31092561  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 18693210 - 18693141
Alignment:
Q  192 tgtatttgtcaaggcggctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagcta 261  Q
    ||||| ||||||| |  ||||||||| || ||||| ||||| |||||||||| ||||| |||||||||||    
T  18693210 tgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggcttagttaaagcta 18693141  T

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Target: scaffold0531 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 10352 - 10260
Alignment:
Q  208 gctttggaggtactcttttgggcacgggtcctcatttcggctgagttaaagctaaaaggcatcactctgttcacctgcttcttcttctttttc 300  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||  |||| ||||| ||| ||| ||||||||||||||||||    
T  10352 gctttggagttactcttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttc 10260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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