View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1461_low_2 (Length: 635)
Name: NF1461_low_2
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 20 - 594
Target Start/End: Original strand, 46767790 - 46768386
Alignment:
| Q |
20 |
tcacagttaagaatcattcattcatgagatctcaacagttcaactactttgtctgtatgccttctagagagccacttcataccactcaaatgcgtgtgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46767790 |
tcacagttaagaatcattcattcatgagatctcaacagttcaactactttgtctgtatgccttctagagagccacttcataccactcaaatgcgtgtgaa |
46767889 |
T |
|
| Q |
120 |
cttgagaacgcgtgcaatgcgcatgagaaatttgtcgaaagaatttacgtcagttatgaattttaatttgttgtgtttggttattgaataacaaaaacac |
219 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46767890 |
cttgagaacccgtgcaatgcgcgtgagaaatttgtcgaaagaatttacgtcagttatgaattttaatttgttgtgtttggttattgaataacaaaaacac |
46767989 |
T |
|
| Q |
220 |
ttaacagtaaatcagtaaatcacagtatcacaatagacatacatcagtgttgtctgtcaactgttaaatacaccttttataaaactaaacataacatcaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46767990 |
ttaacagtaaatcagtaaatcacagtatcacaagagacatacatcagtgttgtctgtcaactgttaaatacaccttttataaaactaaacataacatcaa |
46768089 |
T |
|
| Q |
320 |
aacacaacaataatatttaagaagaaaatgtggatacataacatgcaatatcaaaaaattagttgtgtaatactaactggttactaaatatgtcacaatg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46768090 |
aacacaacaataatatttaagaagaaaatgtggatacataacatgcaatatcaaaaaattagttgtgtaatactaactggttactaaatatgtcacaatg |
46768189 |
T |
|
| Q |
420 |
catacagccaacagaagttactggtgaggactgaggagggtaaactaagtgctctgcaatccacaataattacttcagggtattgttttaaaagcatttt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46768190 |
catacagccaacagaagttactggtgaggactgaggagggtaaactaagtgctctgcaatccacaataattacttcagggtattgttttaaaagcatttt |
46768289 |
T |
|
| Q |
520 |
cat----------------------aaatgtgatgtgatgatgggagttagaggtggcttagctttggtgttcagaattgggagtttagtcttgagg |
594 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46768290 |
cataaaaagagagataattgtacacaaatgtgatgtgatgataggagttagaggtggcttagctttggtgttcaggattgggagtttagtcttgagg |
46768386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 238 - 359
Target Start/End: Original strand, 35045656 - 35045775
Alignment:
| Q |
238 |
atcacagtatcacaatagacatacatcagtgttgtctgtcaactgttaaatacaccttttataaaactaaacataacatcaaaacacaacaataatattt |
337 |
Q |
| |
|
|||||| || |||| ||||| ||||||| |||||||| |||||| ||| || ||||||||||||||||||| |||||||||||||||||| || ||| |
|
|
| T |
35045656 |
atcacaataacacattagacttacatcaatgttgtct--caactggtaagtagctcttttataaaactaaacatcacatcaaaacacaacaatgatgttt |
35045753 |
T |
|
| Q |
338 |
aagaagaaaatgtggatacata |
359 |
Q |
| |
|
|||| | |||||| ||||||| |
|
|
| T |
35045754 |
tagaaaacaatgtgaatacata |
35045775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 31527756 - 31527846
Alignment:
| Q |
236 |
aaatcacagtatcacaatagacatacatcagtgttgtctgtcaactgttaaatacaccttttataaaactaaacataacatcaaaacacaa |
326 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| || | ||| ||| || |||| |||||||||||||| ||| ||||||||||||||| |
|
|
| T |
31527756 |
aaatcacagtatcacattagacatacatccctgtggtgtatcatttgtgaagtacatcttttataaaactacacaaaacatcaaaacacaa |
31527846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 31719694 - 31719642
Alignment:
| Q |
144 |
gagaaatttgtcgaaagaatttacgtcagttatgaattttaatttgttgtgtt |
196 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||| || |||||||||||||| |
|
|
| T |
31719694 |
gagaaatttgttgaaagaatctacgctagttatgagttataatttgttgtgtt |
31719642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 40161106 - 40161150
Alignment:
| Q |
293 |
cttttataaaactaaacataacatcaaaacacaacaataatattt |
337 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| ||||||||||| |
|
|
| T |
40161106 |
cttttataaagctaaagataacatcaaaacacatcaataatattt |
40161150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 28843296 - 28843235
Alignment:
| Q |
276 |
tcaactgttaaatacaccttttataaaactaaacataacatcaaaacacaacaataatattt |
337 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||||||| || |||||||| | ||||||||| |
|
|
| T |
28843296 |
tcaactgttaagtacctcttttataaatctaaacataatattaaaacacatctataatattt |
28843235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 377
Target Start/End: Original strand, 43538958 - 43539041
Alignment:
| Q |
294 |
ttttataaaactaaacataacatcaaaacacaacaataatatttaagaagaaaatgtggatacataacatgcaatatcaaaaaa |
377 |
Q |
| |
|
||||||||| ||||| |||||| |||||||| ||||||| |||||||| |||||| || ||||| |||| ||||||||||| |
|
|
| T |
43538958 |
ttttataaagctaaatataacaccaaaacacgtcaataatgtttaagaaagcaatgtgaatccataatatgctatatcaaaaaa |
43539041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University