View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_20 (Length: 268)
Name: NF1461_low_20
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 30302647 - 30302904
Alignment:
| Q |
1 |
tatagttataaatagtaccctttgatctcaatactcactcatctctcatcatataaagtgaaaataattcaaatcattatggcaatcaaagctccatttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30302647 |
tatagttataaatagtaccctttgatctcaatactcactcatctctcatcatataaagtgaaaataattcaaatcattatggcaatcaaagctccatttc |
30302746 |
T |
|
| Q |
101 |
aacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgatcaacacgatcaagagaacccttttttctttaatgctaa |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30302747 |
aacttttcatgctgctgggaatttttttcctagcctcagtttgtgtctcttctaaagacgatcaacacgatcaagagaacccttttttctttaatgctaa |
30302846 |
T |
|
| Q |
201 |
ccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcacaggttc |
258 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
30302847 |
ccgtttccaaactctttttgaaaatgaaaatggtcacattcgtctccttcaaaggttc |
30302904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 30289969 - 30290211
Alignment:
| Q |
7 |
tataaatagtaccctttgatctcaatactcactcatctctcatcatat-aaagtgaaaataattcaaatcattatggcaatcaaagctccatttcaactt |
105 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30289969 |
tataaatagtaccctttcatctcaatactcactcatctctcatcatatcaaagtgaaaataattcaaatcattatggcaatcaaagctccatttcaactt |
30290068 |
T |
|
| Q |
106 |
ttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgatcaacacgatcaagagaacccttttttctttaatgctaaccgtt |
205 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
30290069 |
ttgatgctgctgggaatttttttcctagcctcagtttgtgtctcttctagatccgat---catgatcaagagaacccttttttctttaatgctaaccgtt |
30290165 |
T |
|
| Q |
206 |
tccaaactctttttgaaaacgaaaatggtcacattcgtctccttca |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30290166 |
tccaaactctttttgaaaacgaaaatggtcacattcgtctccttca |
30290211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 30297470 - 30297717
Alignment:
| Q |
16 |
taccctttgatctcaatactcactcatctc-----tcatcatat-aaagtgaaaataattcaaatcattatggcaatcaaagctccatttcaacttttca |
109 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30297470 |
taccctttgatctcaatactccctcatctcatctctcatcatagcaaagtgaaaataattcaaatcattatggcaatcaaagctccatttcaacttttga |
30297569 |
T |
|
| Q |
110 |
tgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgatcaacacgatcaagagaacccttttttctttaatgctaaccgtttcca |
209 |
Q |
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|||||||||||| ||| |||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30297570 |
tgctgctgggaatttttttcctggcctcagtttgtgtatcttctagagatgatcgacacgatcaagagaacccttttttctttaatgctaaccatttcca |
30297669 |
T |
|
| Q |
210 |
aactctttttgaaaacgaaaatggtcacattcgtctccttcacaggtt |
257 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
30297670 |
aactctttttgagaacgaaaatggtcacattcgtctcctccaaaggtt |
30297717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 30313584 - 30313752
Alignment:
| Q |
71 |
aaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgatcaacacga |
170 |
Q |
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|||||| |||||||||||||||||| | | |||||| |||||||| |||| |||||||||||||||||||||||||| | |||||| || |
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| T |
30313584 |
aaatcaatatggcaatcaaagctccttcttcacttttgatgctgcttggaactgttttcctagcctcagtttgtgtctcttctagatctgatcaa---ga |
30313680 |
T |
|
| Q |
171 |
tcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcg |
242 |
Q |
| |
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||| |||||||| ||| ||||||| ||||| | || |||||||||||||| |||||||||||||||||||| |
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| T |
30313681 |
tcaggagaacccctttatctttaactctaacaggtttcaaactctttttgagaacgaaaatggtcacattcg |
30313752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 30285077 - 30285260
Alignment:
| Q |
71 |
aaatcattatggcaatcaaagctccatttcaacttttcatgctgctgggaannnnnnncctagcctcagtttgtgtctcttctaaagacgatcaacacga |
170 |
Q |
| |
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|||||| |||||||||||||||||| | | |||||| |||||||| |||| |||||||||| ||||||||||||||| | |||||| || |
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| T |
30285077 |
aaatcaatatggcaatcaaagctccttgttcacttttgatgctgcttggaattgtattcctagcctcaatttgtgtctcttctagatctgatcaa---ga |
30285173 |
T |
|
| Q |
171 |
tcaagagaacccttttttctttaatgctaaccgtttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcacaggtt |
257 |
Q |
| |
|
||| |||||||| ||| ||||||| ||||| | || |||||||||||||| || ||||||||||||||||||||||| || ||||| |
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| T |
30285174 |
tcaggagaacccctttatctttaactctaacaggtttcaaactctttttgagaatgaaaatggtcacattcgtctcctccaaaggtt |
30285260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30313510 - 30313546
Alignment:
| Q |
1 |
tatagttataaatagtaccctttgatctcaatactca |
37 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||||| |
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| T |
30313510 |
tatagctataaatagtaccctttgatctcaacactca |
30313546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 46808707 - 46808748
Alignment:
| Q |
205 |
ttccaaactctttttgaaaacgaaaatggtcacattcgtctc |
246 |
Q |
| |
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|||||||| || ||||| |||||||||||||||||||||||| |
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| T |
46808707 |
ttccaaacactctttgagaacgaaaatggtcacattcgtctc |
46808748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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