View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_21 (Length: 268)
Name: NF1461_low_21
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 28888673 - 28888926
Alignment:
| Q |
13 |
aatatataacatatgaatttattgtagagaaatggagcagaaattgataccaaggaaatagggtatgaaacctatgagttagctgaaaaatgtttgaaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28888673 |
aatatataacatatgaatttattgtagagaaatggagcagaaattgataccaaggaaatagggtatgaaacctatgagttagctgaaaaatgtttgaaaa |
28888772 |
T |
|
| Q |
113 |
caaacttctatggagtagaaagagtaactgaagctcttgttcctcttcttcaactatccacttctccaacaattgtcaatgtttcctccagagcaggact |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28888773 |
caaacttctatggagtagaaagagtaacagaagctcttgttcctcttcttcaactatccacttctccaacaattgtcaatgtttcctccagagcaggact |
28888872 |
T |
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| Q |
213 |
attgcacgtacaannnnnnnagaatatgttgcttgaattcttcatgtctctata |
266 |
Q |
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|||| | |||||| ||||||||||| ||| ||||||||| |||||||| |
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| T |
28888873 |
attgaaagtacaatttttttagaatatgttgtttggattcttcatatctctata |
28888926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 36016838 - 36017090
Alignment:
| Q |
13 |
aatatataacatatgaatttattgtagagaaatggagcagaaattgataccaaggaaatagggtatgaaacctatgagttagctgaaaaatgtttgaaaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016838 |
aatatataacatatgaatttattgtagagaaatggagcagaaattgataccaaggaa-tagggtatgaaacctatgagttagctgaaaaatgtttgaaaa |
36016936 |
T |
|
| Q |
113 |
caaacttctatggagtagaaagagtaactgaagctcttgttcctcttcttcaactatccacttctccaacaattgtcaatgtttcctccagagcaggact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36016937 |
caaacttctatggagtagaaagagtaactgaagctcttgttcctcttcttcaactatccacttctccaacaattgtcaatgtttcctccagagcaggact |
36017036 |
T |
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| Q |
213 |
attgcacgtacaannnnnnnagaatatgttgcttgaattcttcatgtctctata |
266 |
Q |
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|||| | |||||| ||||||||||| ||| |||||||||||||||||| |
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|
| T |
36017037 |
attgaaagtacaatttttttagaatatgttgtttggattcttcatgtctctata |
36017090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 11944438 - 11944318
Alignment:
| Q |
80 |
aaacctatgagttagctgaaaaatgtttgaaaacaaacttctatggagtagaaagagtaactgaagctcttgttcctcttcttcaactatccacttctcc |
179 |
Q |
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|||| ||||| ||||| ||| ||||| | ||| |||||||| ||| | ||||||||||||||||||||| |||| || || || |||| ||||| || |
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| T |
11944438 |
aaacttatgaattagccgaagaatgtgttgaaataaacttctttggtgctgaaagagtaactgaagctcttattcccctgctccagttatctacttcacc |
11944339 |
T |
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| Q |
180 |
aacaattgtcaatgtttcctc |
200 |
Q |
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| T |
11944338 |
tagaattgtcaatgtctcctc |
11944318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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