View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_23 (Length: 243)
Name: NF1461_low_23
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 42453231 - 42453022
Alignment:
| Q |
20 |
tatcgctgtctttgtctctcattcccatgtcgtataaaaaagtgctgttcttgttgaaaaatccttcatatagcattccaattctttggtcattttaatt |
119 |
Q |
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| T |
42453231 |
tatcgctgtttttgtctctcattcccatgtcgtataaaaaagtgctgttcttgtttaaaaatccttcatatagcattccaattctttggtcattttaatt |
42453132 |
T |
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| Q |
120 |
ttattatcaattagatatctgtttcaaatattcgcatggttgcacttgaaatcaataaattacattgtttttctcttcgatccaaaagcatcgaccctcc |
219 |
Q |
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| T |
42453131 |
ttattatcaattagatatctgtttcaaatattcgcatggctgcacttgaaatcaataaattacattgtttttctcttcgatccaaaagcatcgaccctcc |
42453032 |
T |
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| Q |
220 |
actctcctat |
229 |
Q |
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|||||||||| |
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| T |
42453031 |
actctcctat |
42453022 |
T |
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