View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_24 (Length: 242)
Name: NF1461_low_24
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 43118469 - 43118393
Alignment:
| Q |
1 |
tgaaatgaaaaatcttcaaatcttaaaaaatagatttttataataggcaacaaatggaaattagctttaactttttc |
77 |
Q |
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| T |
43118469 |
tgaaatgaaaaatcttcaaatcttaaaaaatagatttttataataggcaacaaatggaagttagctttaactttttc |
43118393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 43118297 - 43118228
Alignment:
| Q |
173 |
atgtataaaaacactaactctaattgaattattttctatcaattctatctttgattcaataattaatttt |
242 |
Q |
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| T |
43118297 |
atgtataaaaacactaactctaattgaattattttctatcaattctatctttgattcaataattaatttt |
43118228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 42863849 - 42863902
Alignment:
| Q |
188 |
aactctaattgaattattttctatcaattctatctttgattcaataattaattt |
241 |
Q |
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| T |
42863849 |
aactctaattggattcttgtctatcaattcaatatttgattccataattaattt |
42863902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 29148659 - 29148597
Alignment:
| Q |
14 |
cttcaaatcttaaaaaata-gatttttataataggcaacaaatggaaattagctttaactttt |
75 |
Q |
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||||||||||||||||| | |||||||||||||| |||||| |||||||||||| ||||||| |
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| T |
29148659 |
cttcaaatcttaaaaaaaatgatttttataatagtaaacaaacggaaattagcttcaactttt |
29148597 |
T |
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