View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1461_low_27 (Length: 236)

Name: NF1461_low_27
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1461_low_27
NF1461_low_27
[»] chr5 (7 HSPs)
chr5 (108-220)||(28854444-28854556)
chr5 (12-97)||(28854580-28854665)
chr5 (14-89)||(28874516-28874591)
chr5 (12-85)||(28828931-28829004)
chr5 (12-85)||(28859950-28860023)
chr5 (128-220)||(28859831-28859924)
chr5 (156-220)||(28874412-28874476)
[»] chr7 (2 HSPs)
chr7 (32-70)||(19939177-19939215)
chr7 (32-70)||(19970316-19970354)
[»] scaffold0341 (1 HSPs)
scaffold0341 (188-220)||(4590-4622)
[»] chr1 (2 HSPs)
chr1 (188-220)||(6502911-6502943)
chr1 (12-72)||(47701299-47701359)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 28854556 - 28854444
Alignment:
Q  108 gtcaggaaacttaccgatgaatttaaatcatgtaaatttgttttctttctgttttcatttatcggctataatacttggcatgtagcgggtatatggcacc 207  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28854556 gtcatgaaacttaccgatgaatttaaatcatgtaaatttgttttctttctgttttcatttatcggctataatacttggcatgtagcgggtatatggcacc 28854457  T
Q  208 tgagtatgtaatg 220  Q
    |||||||||||||    
T  28854456 tgagtatgtaatg 28854444  T

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Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 28854665 - 28854580
Alignment:
Q  12 taattcttgtggatcaaacacaagaaaatacaagtagagttgttggaacttagtaagtattatattatgtttgaacttggcgatga 97  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28854665 taattcttgtggatcaaacacaagaaaatacaagtagtgttgttggaacttagtaagtattatattatgtttgaacttggcgatga 28854580  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 28874591 - 28874516
Alignment:
Q  14 attcttgtggatcaaacacaagaaaatacaagtagagttgttggaacttagtaagtattatattatgtttgaactt 89  Q
    ||||||||||||||||| |||| |||||||||||||||||||| ||| |||||||| ||| |||||||||||||||    
T  28874591 attcttgtggatcaaacccaagcaaatacaagtagagttgttgaaacctagtaagtgttagattatgtttgaactt 28874516  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 28829004 - 28828931
Alignment:
Q  12 taattcttgtggatcaaacacaagaaaatacaagtagagttgttggaacttagtaagtattatattatgtttga 85  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| || ||| |||||||    
T  28829004 taattcttgtggatcaaacacaagcaaatacaagtagaattgttggaacctagtaagtaataaattttgtttga 28828931  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 28860023 - 28859950
Alignment:
Q  12 taattcttgtggatcaaacacaagaaaatacaagtagagttgttggaacttagtaagtattatattatgtttga 85  Q
    |||||||  |||||||||| |||| |||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  28860023 taattctattggatcaaacccaagcaaatacaagtagagttgttggaacctagtaagtgttagattatgtttga 28859950  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 28859924 - 28859831
Alignment:
Q  128 atttaaatcatgtaaatttgttttcttt-ctgttttcatttatcggctataatacttggcatgtagcgggtatatggcacctgagtatgtaatg 220  Q
    ||||||||||||||||| | || | ||| |||||||||||||   || | |||| |||||||||||||| ||||||||||||||||||||||||    
T  28859924 atttaaatcatgtaaatattttgtgtttactgttttcatttacgcgcaacaatatttggcatgtagcggatatatggcacctgagtatgtaatg 28859831  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 28874476 - 28874412
Alignment:
Q  156 ctgttttcatttatcggctataatacttggcatgtagcgggtatatggcacctgagtatgtaatg 220  Q
    |||||||||||||   || | |||| |||||||||||||| ||||||||||||||||||||||||    
T  28874476 ctgttttcatttacgcgcaacaatatttggcatgtagcggatatatggcacctgagtatgtaatg 28874412  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 19939177 - 19939215
Alignment:
Q  32 caagaaaatacaagtagagttgttggaacttagtaagta 70  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  19939177 caagaaaatacaagaagagttgttggtacttagtaagta 19939215  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 19970316 - 19970354
Alignment:
Q  32 caagaaaatacaagtagagttgttggaacttagtaagta 70  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  19970316 caagaaaatacaagaagagttgttggtacttagtaagta 19970354  T

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Target: scaffold0341 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 4622 - 4590
Alignment:
Q  188 tgtagcgggtatatggcacctgagtatgtaatg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  4622 tgtagcggatatatggcacctgagtatgtaatg 4590  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 6502943 - 6502911
Alignment:
Q  188 tgtagcgggtatatggcacctgagtatgtaatg 220  Q
    |||||||| ||||||||||||||||||||||||    
T  6502943 tgtagcggatatatggcacctgagtatgtaatg 6502911  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 47701359 - 47701299
Alignment:
Q  12 taattcttgtggatcaaacacaagaaaatacaagtagagttgttggaacttagtaagtatt 72  Q
    ||||||||||||||||||| |||| |||||||  || ||| ||||| || |||||||||||    
T  47701359 taattcttgtggatcaaactcaagtaaatacagataaagtcgttgggacatagtaagtatt 47701299  T

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