View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1461_low_29 (Length: 228)
Name: NF1461_low_29
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_29 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 28889153 - 28888931
Alignment:
| Q |
7 |
tcaatgtcattaaacacttttctagcccactcatttgatatattctgaaacagttaaattaaataataatattaacaataataaatcacaatgattatag |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28889153 |
tcaatgtcattaaacactattctagcccactcatttgatatattctgaaacagttaaattaaataataatattaagaataataaatcacaatgattatag |
28889054 |
T |
|
| Q |
107 |
-tgaaatgatcaaccagcttttagacattgatcatcatgtgtcttttatagttcatctgaccatagctcaattgttaaactatcaaattttatattaatt |
205 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
28889053 |
gtgaaatgatcaactagcttttagacattgatcatcatgtgtcttttatagttcatctgaccatagttcaattgttaaactatcagattttatattaatt |
28888954 |
T |
|
| Q |
206 |
caacgattgatctatggtcagat |
228 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
28888953 |
caacgattaatctatggtcagat |
28888931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 36017328 - 36017095
Alignment:
| Q |
7 |
tcaatgtcattaaacacttttctagcccactcatttgatatattctgaaacagttaaattaaataataatattaacaataataa------------atca |
94 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36017328 |
tcaatgtcattaaacacttttctagcccagtcatttgatatattctgaaacagttaaattaaataataatattaacaataataataacaataataaatca |
36017229 |
T |
|
| Q |
95 |
caatgattatagtgaaatgatcaaccagcttttagacattgatcatcatgtgtcttttatagttcatctgaccatagctcaattgttaaactatcaaatt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
36017228 |
caatgattatagtgaaatgatcaaccagcttttagacattgatcatcatgtgtcttttatagttcatctgactatagctcaattgttaaactatcagatt |
36017129 |
T |
|
| Q |
195 |
ttatattaattcaacgattgatctatggtcagat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36017128 |
ttatattaattcaacgattgatctatggtcagat |
36017095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University