View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1461_low_3 (Length: 583)
Name: NF1461_low_3
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_3 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] scaffold0341 (4 HSPs) |
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|
Alignment Details
Target: chr5 (Bit Score: 546; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 10 - 583
Target Start/End: Complemental strand, 28855263 - 28854690
Alignment:
| Q |
10 |
ataatactagattactttgtccaaacatgacaaaatttggctataataaaatattttactgtactgacaattagtcgtgtctttttagggtacgctctct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28855263 |
ataatactagattactttgtccaaacatgacaaaatttggctataataaaatattttactgtactgacaattagtcgtgtctttttagggtacgctctct |
28855164 |
T |
|
| Q |
110 |
aatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
28855163 |
aatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctaaacttcaacatc |
28855064 |
T |
|
| Q |
210 |
gaaatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttgg |
309 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28855063 |
aaaatttagttaggttacttggttttactatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttgg |
28854964 |
T |
|
| Q |
310 |
tatacttaaaatttcatcgtcattagattgttgctctattattcaactttgtttcatgataaagactgactttcaagatagcttaaatgtgcatgatttg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
28854963 |
tatacttaaaatttcatcgtcattagattgttgctctattattcaactttttttcatgataaagattgactttcaagatagcttaaatgtgcatgacttg |
28854864 |
T |
|
| Q |
410 |
ttgtatttgtagatcctacaaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgagga |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28854863 |
ttgtatttgtagatcctacaaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgagga |
28854764 |
T |
|
| Q |
510 |
ttctcgactacgcattatacaccgtgatctcaaagcaggcaatattctcttagctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28854763 |
ttctcgactacgcattatacaccgtgatctcaaagcaggcaatattctcttagatgaaaacatgaatgctaaga |
28854690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 40 - 583
Target Start/End: Complemental strand, 28860593 - 28860048
Alignment:
| Q |
40 |
caaaatttggctataataaaatat-tttactgtactgacaattagtcgtgtctttttagggtacgctctctaatggacaagtgattgccgtcaaaaggtt |
138 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||||| |||| |||||| ||||||| |||||| ||||||||||||||||| ||| || || |||||||| |
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|
| T |
28860593 |
caaaacttggctaaaataaaatatatttactgtacttacaactagtcgcgtcttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggtt |
28860494 |
T |
|
| Q |
139 |
gtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatcgaaatttagttaggttacttggttttatt |
238 |
Q |
| |
|
|||||| |||||||||||||||||| || |||||||||||| | | || ||||| |||||||||| || ||||||||||| |||||||||||| | |
|
|
| T |
28860493 |
gtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttaatggccaaacttcaacaccggaatttagttagactacttggttttact |
28860394 |
T |
|
| Q |
239 |
atcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggtatacttaaaatttcatcgtcattagatt |
338 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| || || | ||| |||| |
|
|
| T |
28860393 |
attgaagggagagaaagactacttgtctatgaatttattcccaataaaagtcttgactacttcatatttggtataattagaatatcgtcataatttgatt |
28860294 |
T |
|
| Q |
339 |
gttgctctattattcaactttgtttcatgataaagactgactttcaagatagcttaaatgtgcatga-tttgttgtatttgtagatcctacaaagaaagc |
437 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||| | | ||| |||||| | | ||||||| | |||||||| |
|
|
| T |
28860293 |
gttgctctatcattcaactttgtttcatgataaagactaactttcgtgatagctaaaacgcgggtgactttgttatgtatgtagattcactgaagaaagc |
28860194 |
T |
|
| Q |
438 |
acaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatacaccgtgat |
537 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||| || ||||||||||| ||| |
|
|
| T |
28860193 |
acaattaatttgggaaaagcgctacaaaatcattcaaggtattgctcgaggcgttctttaccttcatgaggattctcgactgcgtattatacaccgcgat |
28860094 |
T |
|
| Q |
538 |
ctcaaagcaggcaatattctcttagctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
||||||||| |||| |||||| ||| ||| ||||||||||||||| |
|
|
| T |
28860093 |
ctcaaagcaagcaacattctcctagacgaagacatgaatgctaaga |
28860048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 46 - 583
Target Start/End: Complemental strand, 28875157 - 28874618
Alignment:
| Q |
46 |
ttggctataataaaatat-tttactgtactgacaattagtcgtgtctttttagggtacgctctctaatggacaagtgattgccgtcaaaaggttgtccat |
144 |
Q |
| |
|
||||||| |||||||||| ||||||||||| |||| |||||| ||||||| |||||| |||||||||||||||| ||| || || |||||||||||||| |
|
|
| T |
28875157 |
ttggctaaaataaaatatatttactgtacttacaactagtcgcgtcttttcagggtaggctctctaatggacaaacgatcgctgttaaaaggttgtccat |
28875058 |
T |
|
| Q |
145 |
gaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatcgaaatttagttaggttacttggttttattatcgaa |
244 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| | | || ||||| |||||||||| || ||||| ||||| |||||||||||| ||| ||| |
|
|
| T |
28875057 |
gaattctggccaaggagatatagaatttaagaatgaagtgcttttaatggccaaacttcaacaccggaatttggttagactacttggttttactattgaa |
28874958 |
T |
|
| Q |
245 |
gggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggtatacttaaaatttcatcgtcattagattgttgct |
344 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |||||| ||| ||| || | | ||||||||||||| |
|
|
| T |
28874957 |
gggagagaaagactacttgtctatgaatttattcccaataaaagtctagactacttcatattcggtataattagaatatcggcataattagattgttgca |
28874858 |
T |
|
| Q |
345 |
ctattattcaactttgtttcatgataaagactgactttcaagatagcttaaatgtgcatga-tttgttgtatttgtagatcctacaaagaaagcacaatt |
443 |
Q |
| |
|
|||| ||||||||||||||||| |||| | | ||||||| |||||| ||||||| | || |||||| | | ||||||||| |||||||||||||| |
|
|
| T |
28874857 |
ctatcattcaactttgtttcattgtaaaaagtaactttcatgatagccaaaatgtggacgactttgttatgtatgtagatccactgaagaaagcacaatt |
28874758 |
T |
|
| Q |
444 |
agattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatacaccgtgatctcaaa |
543 |
Q |
| |
|
||||||||| || ||||||||||||||| |||| ||||||||||| ||||| |||||||||| |||||| |||| || ||||||||||| ||||||||| |
|
|
| T |
28874757 |
agattgggagaagcgctacaaaatcattcaaggcattgctcgaggcgttctttatcttcatggggattcaagactgcgtattatacaccgcgatctcaaa |
28874658 |
T |
|
| Q |
544 |
gcaggcaatattctcttagctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
||| |||| |||||||||| ||| || |||||||||||| |
|
|
| T |
28874657 |
gcaagcaacattctcttagacgaagacgtgaatgctaaga |
28874618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 86 - 350
Target Start/End: Complemental strand, 28829510 - 28829246
Alignment:
| Q |
86 |
gtgtctttttagggtacgctctctaatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaa |
185 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||| || |
|
|
| T |
28829510 |
gtgtcttttcagggtagactctctaatggacaagtgattgcggtgaaaaggttatccataaattctggtcaaggagatctagaatttaagaacgaagtac |
28829411 |
T |
|
| Q |
186 |
tcttgatggctgaacttcaacatcgaaatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataa |
285 |
Q |
| |
|
||| |||| |||||||||| |||||||||||||| | |||||||||| | | ||||||||||||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
28829410 |
gtttggtggccaaacttcaacaccgaaatttagttagactccttggttttactgttgaagggagagaaagattacttgtctatgaatttgttcctaataa |
28829311 |
T |
|
| Q |
286 |
aagtcttgactacttcatatttggtatacttaaaatttcatcgtcattagattgttgctctatta |
350 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||| |||| | |||||||||||||||||||| |
|
|
| T |
28829310 |
aagtcttgactacttcatatttggtataataagaatctcattataattagattgttgctctatta |
28829246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 417 - 583
Target Start/End: Complemental strand, 28829195 - 28829029
Alignment:
| Q |
417 |
tgtagatcctacaaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcga |
516 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
28829195 |
tgtagatccaacaaagaaagcacaattagattgggaaaagcgctacaaaatcattcaaggtattactcgaggtgttctttatcttcatgaagattctcga |
28829096 |
T |
|
| Q |
517 |
ctacgcattatacaccgtgatctcaaagcaggcaatattctcttagctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| |||||||||| || | ||||||||||||||| |
|
|
| T |
28829095 |
ctacgcattatacaccgtgatcttaaagcaagcaacattctcttagatggagacatgaatgctaaga |
28829029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 417 - 583
Target Start/End: Complemental strand, 27368847 - 27368681
Alignment:
| Q |
417 |
tgtagatcctacaaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcga |
516 |
Q |
| |
|
||||||||| |||| |||| ||||||| ||||| ||| |||||||| ||||| |||||||||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
27368847 |
tgtagatccgacaaggaaaacacaattgaattggcaaacgcgctacaatatcataaaaggtattgctcgaggtcttctttatcttcacgaggattctcgc |
27368748 |
T |
|
| Q |
517 |
ctacgcattatacaccgtgatctcaaagcaggcaatattctcttagctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||| |||| ||| | |||||| |||||| |
|
|
| T |
27368747 |
ttgcgcattatacaccgtgatctcaaagcaagcaatattcttttagacgaagagatgaatcctaaga |
27368681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 120 - 311
Target Start/End: Complemental strand, 27369328 - 27369137
Alignment:
| Q |
120 |
tgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatcgaaatttagt |
219 |
Q |
| |
|
||||||| || ||||||||||| | ||||||| |||||||||| | || ||||| |||||| || | || | || ||||||||||||||||| |||| |
|
|
| T |
27369328 |
tgattgctgtgaaaaggttgtcaacaaattctgaccaaggagatgttgagtttaaaaatgaagtacttttagtagccaaacttcaacatcgaaatctagt |
27369229 |
T |
|
| Q |
220 |
taggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggta |
311 |
Q |
| |
|
|||| |||||||||| | | |||||||||||||||||||| | |||||||||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
27369228 |
taggctacttggtttctgtctagaagggagagaaagactacttatttatgaatttgtttcaaataaaagtcttgattacttcatatttggta |
27369137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 25)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 110 - 311
Target Start/End: Original strand, 6524882 - 6525083
Alignment:
| Q |
110 |
aatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatc |
209 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| | | ||||||||||||||||| | ||||||||||||||| || | || ||||| |||||||||||| |
|
|
| T |
6524882 |
aatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagttttagtggctaaacttcaacatc |
6524981 |
T |
|
| Q |
210 |
gaaatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttgg |
309 |
Q |
| |
|
|||| ||||||||| |||||||||| ||| ||||| |||||||||||||| || ||||||||||||| ||||| || || || |||||| | ||||| |
|
|
| T |
6524982 |
gaaacttagttaggctacttggtttctgtatagaaggaagagaaagactacttgtatatgaatttgttcagaataagagcctcgattacttcctttttgg |
6525081 |
T |
|
| Q |
310 |
ta |
311 |
Q |
| |
|
|| |
|
|
| T |
6525082 |
ta |
6525083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 103 - 306
Target Start/End: Original strand, 47774483 - 47774686
Alignment:
| Q |
103 |
gctctctaatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaactt |
202 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||| ||||||| |||||| |||||||||| |||||||||| |||||| || | || | || ||||| |
|
|
| T |
47774483 |
gctccctaatggacaaatgattgcggtcaaaagattgtccaaagattctgaccaaggagatgtggaatttaaaaatgaagtacttttagtagccaaactt |
47774582 |
T |
|
| Q |
203 |
caacatcgaaatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttca |
302 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | | | ||||||||||||| ||| || | ||||||| |||| | |||||||||||||| ||||||| |
|
|
| T |
47774583 |
caacatcgaaatttagttaggctacttggtttcagtttagaagggagagaaaaactgcttatttatgaatatgttacaaataaaagtcttgattacttca |
47774682 |
T |
|
| Q |
303 |
tatt |
306 |
Q |
| |
|
|||| |
|
|
| T |
47774683 |
tatt |
47774686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 430 - 583
Target Start/End: Complemental strand, 6497957 - 6497804
Alignment:
| Q |
430 |
aagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatac |
529 |
Q |
| |
|
|||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||| |||| || ||||| |||||||||||||| |||||||| | |
|
|
| T |
6497957 |
aagaaagcgcaattaaattgggaaatgcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactgcgcattattc |
6497858 |
T |
|
| Q |
530 |
accgtgatctcaaagcaggcaatattctcttagctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
| ||||||||||||||| | || |||||||||| |||| | |||||| |||||| |
|
|
| T |
6497857 |
atcgtgatctcaaagcaagtaacattctcttagatgaagaaatgaatcctaaga |
6497804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 112 - 311
Target Start/End: Complemental strand, 47744589 - 47744390
Alignment:
| Q |
112 |
tggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatcga |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||||| || ||||| ||| | ||||||||||||||| | | || | ||| | |||||||||||| |
|
|
| T |
47744589 |
tggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
47744490 |
T |
|
| Q |
212 |
aatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggta |
311 |
Q |
| |
|
||||||||||| ||||||||||| | | ||||| ||||||||| | || |||||||||| |||||| |||||||||||||| || || |||||||||| |
|
|
| T |
47744489 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttgtctatgaatatgttccaaataaaagtcttgattattttatatttggta |
47744390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 428 - 583
Target Start/End: Complemental strand, 6510913 - 6510758
Alignment:
| Q |
428 |
caaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattat |
527 |
Q |
| |
|
|||| ||||| |||||| |||||| || ||||||||||||||| ||||||||||||||| |||| || ||||| ||||||||||||||||| |||| |
|
|
| T |
6510913 |
caaaaaaagcgcaattaaattggggaaggcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactacgtgttat |
6510814 |
T |
|
| Q |
528 |
acaccgtgatctcaaagcaggcaatattctcttagctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||| | |||| | |||||| |||||| |
|
|
| T |
6510813 |
tcatcgtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaaga |
6510758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 112 - 311
Target Start/End: Complemental strand, 47712074 - 47711875
Alignment:
| Q |
112 |
tggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatcga |
211 |
Q |
| |
|
||||||||| ||||| |||||||||||||| | ||||| || ||||| ||| | ||||||||||||||| | | || | ||| | |||||||||||| |
|
|
| T |
47712074 |
tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
47711975 |
T |
|
| Q |
212 |
aatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggta |
311 |
Q |
| |
|
||||||||||| ||||||||||| | | ||||| ||||||||| | || |||||||||||||||| |||||||||||||| || || |||||||||| |
|
|
| T |
47711974 |
aatttagttagactacttggtttttgtctagaaggaagagaaagattgcttatctatgaatttgttccgaataaaagtcttgattattttatatttggta |
47711875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 435 - 562
Target Start/End: Original strand, 47774790 - 47774917
Alignment:
| Q |
435 |
agcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatacaccgt |
534 |
Q |
| |
|
||||||||| |||||||||| ||||| | ||||| ||| |||||| ||||||| || | |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
47774790 |
agcacaattgaattgggaaaagcgctatgatatcataaaatgtattgttcgaggtcttatttatcttcatgaggattctcgcctccgcattatacaccgt |
47774889 |
T |
|
| Q |
535 |
gatctcaaagcaggcaatattctcttag |
562 |
Q |
| |
|
||||||||||| ||||||||||||||| |
|
|
| T |
47774890 |
gatctcaaagctagcaatattctcttag |
47774917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 428 - 562
Target Start/End: Complemental strand, 6515303 - 6515169
Alignment:
| Q |
428 |
caaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattat |
527 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| ||||||| ||||||||||||||| |||| || || ||||||||||||||| | || |||| |
|
|
| T |
6515303 |
caaagaaagcacaattaaattgggaaaggcgctacacaatcattttaggtattgctcgaggcattctttacctccatgaggattctcgagtgcgtgttat |
6515204 |
T |
|
| Q |
528 |
acaccgtgatctcaaagcaggcaatattctcttag |
562 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||| |
|
|
| T |
6515203 |
tcatcgtgatctcaaagcaagcaatattctcttag |
6515169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 91 - 311
Target Start/End: Complemental strand, 6515659 - 6515439
Alignment:
| Q |
91 |
tttttagggtacgctctctaatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttg |
190 |
Q |
| |
|
||||||||||| |||||||||||||| || || || |||||||||| || ||||||||||| ||||||||||| || ||||||||||| | | || |
|
|
| T |
6515659 |
tttttagggtaggctctctaatggactagaaatcgctatcaaaaggttatcaatgaattctggacaaggagatctagagtttaagaatgaggtgtttttc |
6515560 |
T |
|
| Q |
191 |
atggctgaacttcaacatcgaaatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtc |
290 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||| ||||| | |||||||| ||||||||||| | || || ||||||| |||||||||| |
|
|
| T |
6515559 |
ctggctaaacttcaacaccgaaatttagttagattactcggtttctgcctagaagggagtgaaagactacttatatacgagtttgttcataataaaagtc |
6515460 |
T |
|
| Q |
291 |
ttgactacttcatatttggta |
311 |
Q |
| |
|
|||| ||||| || ||||||| |
|
|
| T |
6515459 |
ttgattactttatttttggta |
6515439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 418 - 562
Target Start/End: Original strand, 47770883 - 47771027
Alignment:
| Q |
418 |
gtagatcctacaaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgac |
517 |
Q |
| |
|
|||||||| || | |||||||||| | ||||| |||| |||||| | || || | |||||||| ||||||| |||| |||||||||||||||||||| | |
|
|
| T |
47770883 |
gtagatccaaccaggaaagcacaactgaattggcaaaagcgctacgatattataagaggtattgttcgaggtcttctttatcttcatgaggattctcgcc |
47770982 |
T |
|
| Q |
518 |
tacgcattatacaccgtgatctcaaagcaggcaatattctcttag |
562 |
Q |
| |
|
|||| ||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
47770983 |
tacgaattatacaccgtgatatcaaagcaagcaacattctcttag |
47771027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 419 - 562
Target Start/End: Complemental strand, 47716551 - 47716408
Alignment:
| Q |
419 |
tagatcctacaaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgact |
518 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||| |||| || |||||| ||||||||| ||| |
|
|
| T |
47716551 |
tagatccaataaagaaagcacaattagactgggaaaggcgctacaaaatcattggaggtattgctagaggccttctttaccttcatcaggattctcaact |
47716452 |
T |
|
| Q |
519 |
acgcattatacaccgtgatctcaaagcaggcaatattctcttag |
562 |
Q |
| |
|
|| |||||||| |||||||| ||||| || || |||||||||| |
|
|
| T |
47716451 |
tcgtattatacatcgtgatcttaaagcgggtaacattctcttag |
47716408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 112 - 311
Target Start/End: Complemental strand, 47716825 - 47716626
Alignment:
| Q |
112 |
tggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatcga |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||||| || ||||| ||| | ||||||||||||||| | | || | ||| | |||||||||||| |
|
|
| T |
47716825 |
tggacaagtgattgcgatcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
47716726 |
T |
|
| Q |
212 |
aatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggta |
311 |
Q |
| |
|
||||||||| | ||||||||||| | | ||||| ||||||||| | || |||||||||||||||| |||||||||||||| || || |||||||||| |
|
|
| T |
47716725 |
aatttagtttgactacttggtttttgtctagaaggaagagaaagattgcttttctatgaatttgttcctaataaaagtcttgattattttatatttggta |
47716626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 123 - 311
Target Start/End: Complemental strand, 6511204 - 6511016
Alignment:
| Q |
123 |
ttgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatcgaaatttagttag |
222 |
Q |
| |
|
|||| ||||||||||| || |||||||| || ||||||||||| || |||||||||||| || | || ||||| |||||||||| ||||||||||| || |
|
|
| T |
6511204 |
ttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagtatttttagtggctaaacttcaacaccgaaatttagtaag |
6511105 |
T |
|
| Q |
223 |
gttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggta |
311 |
Q |
| |
|
||||| ||||| | ||||| |||||||||||||| | ||||| ||||||| |||||||||||||| ||||| || ||||||| |
|
|
| T |
6511104 |
attactcggtttctgcctagaaggaagagaaagactacttatatatgagtttgttcataataaaagtcttgattactttatttttggta |
6511016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 153 - 311
Target Start/End: Original strand, 47770625 - 47770783
Alignment:
| Q |
153 |
gccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatcgaaatttagttaggttacttggttttattatcgaagggagaga |
252 |
Q |
| |
|
||||||||||| |||||||||| |||||| || | || | || | ||||||||||||||||||||||| | |||||||| | | | |||||||| || |
|
|
| T |
47770625 |
gccaaggagatgtggaatttaaaaatgaagtattattagtagccaagcttcaacatcgaaatttagttagacttcttggtttcagtttagaagggagtga |
47770724 |
T |
|
| Q |
253 |
aagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggta |
311 |
Q |
| |
|
|||||| || | |||||||||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
47770725 |
aagacttcttatttatgaatttgttacaaataaaagtcttgattacttcatatttggta |
47770783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 91 - 311
Target Start/End: Complemental strand, 6498297 - 6498077
Alignment:
| Q |
91 |
tttttagggtacgctctctaatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttg |
190 |
Q |
| |
|
|||| |||||| ||| || |||||||||| |||||| || ||||||||||| |||| ||| || ||||||||| ||| ||||||||||| || | ||| |
|
|
| T |
6498297 |
ttttcagggtaggctatccaatggacaagagattgctgttaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttg |
6498198 |
T |
|
| Q |
191 |
atggctgaacttcaacatcgaaatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtc |
290 |
Q |
| |
|
||||| | |||||||| |||||||||||||| |||| ||||| | ||||| ||||||||| |||| || ||||||||||||| || ||||||| |
|
|
| T |
6498197 |
gtggctaagcttcaacaccgaaatttagttagactactcggtttctcactagaaggaagagaaagagtacttgtatatgaatttgttcaaaacaaaagtc |
6498098 |
T |
|
| Q |
291 |
ttgactacttcatatttggta |
311 |
Q |
| |
|
| || || ||||| ||||||| |
|
|
| T |
6498097 |
tcgattatttcatttttggta |
6498077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 463 - 583
Target Start/End: Original strand, 6525236 - 6525356
Alignment:
| Q |
463 |
aaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatacaccgtgatctcaaagcaggcaatattctcttag |
562 |
Q |
| |
|
||||||||| ||||| ||||||||| |||| || ||||||||||||||||| || || ||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
6525236 |
aaaatcattgtaggtactgctcgaggaattctttaccttcatgaggattctcggctgcgtattattcatcgtgatctcaaagcaagcaatattctcttag |
6525335 |
T |
|
| Q |
563 |
ctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
|||| | |||||| |||||| |
|
|
| T |
6525336 |
atgaagagatgaatcctaaga |
6525356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 112 - 311
Target Start/End: Complemental strand, 47758972 - 47758773
Alignment:
| Q |
112 |
tggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatcga |
211 |
Q |
| |
|
||||||||| ||||| |||||||||||||| | ||||| || || || ||| | ||||||||||||||| | | || | ||| | |||||||||||| |
|
|
| T |
47758972 |
tggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacagggggatgttgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcga |
47758873 |
T |
|
| Q |
212 |
aatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggta |
311 |
Q |
| |
|
||||||||| | ||||||||||| | | ||||| ||||||||| | || || ||||||| |||||| |||||||||||||| || || |||||||||| |
|
|
| T |
47758872 |
aatttagttcgactacttggtttttgtctggaaggaagagaaagattgcttgtttatgaatatgttccgaataaaagtcttgattattttatatttggta |
47758773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 91 - 311
Target Start/End: Complemental strand, 6503616 - 6503396
Alignment:
| Q |
91 |
tttttagggtacgctctctaatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttg |
190 |
Q |
| |
|
|||| |||||| ||||| |||||||||| | |||| ||||||||||| || ||||||||||| ||||||||| || |||||||||||| | | || |
|
|
| T |
6503616 |
ttttcagggtaggctcttcaatggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgttttta |
6503517 |
T |
|
| Q |
191 |
atggctgaacttcaacatcgaaatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtc |
290 |
Q |
| |
|
| ||| |||||||||| ||||| ||||||| ||||| |||||| | ||||| ||||||||||| || || ||||| |||||| |||||||||| |
|
|
| T |
6503516 |
gttgctaaacttcaacacagaaatctagttagattactcggtttttgcctagaaggaagagaaagacttcttgtatatgagtttgtttgtaataaaagtc |
6503417 |
T |
|
| Q |
291 |
ttgactacttcatatttggta |
311 |
Q |
| |
|
|||| ||||| || ||||||| |
|
|
| T |
6503416 |
ttgattactttatttttggta |
6503396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 419 - 562
Target Start/End: Complemental strand, 47758698 - 47758555
Alignment:
| Q |
419 |
tagatcctacaaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgact |
518 |
Q |
| |
|
||||||| | |||||||||||| || |||||||||| ||||| ||||||||| |||||||||| |||| |||| || ||||| |||||||||| ||| |
|
|
| T |
47758698 |
tagatccaataaagaaagcacagttggattgggaaaggcgctataaaatcattggaggtattgctagaggccttctttaccttcacgaggattctcaact |
47758599 |
T |
|
| Q |
519 |
acgcattatacaccgtgatctcaaagcaggcaatattctcttag |
562 |
Q |
| |
|
|| |||||||| |||||||| ||||| | || |||||||||| |
|
|
| T |
47758598 |
tcgtattatacatcgtgatcttaaagcgagtaacattctcttag |
47758555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 445 - 569
Target Start/End: Complemental strand, 47711774 - 47711650
Alignment:
| Q |
445 |
gattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatacaccgtgatctcaaag |
544 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| ||| |||| |||| || |||||||||||||||| ||| || |||||||| |||||||| |||| |
|
|
| T |
47711774 |
gattgggaaaggcgctacaaaatcattggaggtatagctagaggccttctttaccttcatgaggattctcaacttcgtattatacatcgtgatcttaaag |
47711675 |
T |
|
| Q |
545 |
caggcaatattctcttagctgaaaa |
569 |
Q |
| |
|
|| | || |||||||| | |||||| |
|
|
| T |
47711674 |
caagtaacattctcttggatgaaaa |
47711650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 419 - 560
Target Start/End: Complemental strand, 47744315 - 47744174
Alignment:
| Q |
419 |
tagatcctacaaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgact |
518 |
Q |
| |
|
||||||| | ||| |||| || ||| |||||||||| ||||||||||||||| ||| ||||| ||||| |||| || |||||| ||||||||| ||| |
|
|
| T |
47744315 |
tagatccaataaacaaagaacgattggattgggaaaggcgctacaaaatcattggaggaattgcaagaggtcttctttaccttcatcaggattctcaact |
47744216 |
T |
|
| Q |
519 |
acgcattatacaccgtgatctcaaagcaggcaatattctctt |
560 |
Q |
| |
|
|| |||||||| |||||||| |||||| | || |||||||| |
|
|
| T |
47744215 |
tcgtattatacatcgtgatcttaaagcaagtaacattctctt |
47744174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 446 - 543
Target Start/End: Original strand, 47690066 - 47690163
Alignment:
| Q |
446 |
attgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatacaccgtgatctcaaa |
543 |
Q |
| |
|
||||||||| |||||||||||| || |||| |||||| || ||| |||| |||||||| || ||||||||| ||| ||| | ||||||||||||||| |
|
|
| T |
47690066 |
attgggaaagacgctacaaaattataaaagatattgcccgtggtcttctttatcttcacgaagattctcgattacaaattgttcaccgtgatctcaaa |
47690163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 583
Target Start/End: Complemental strand, 6503293 - 6503138
Alignment:
| Q |
428 |
caaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattat |
527 |
Q |
| |
|
|||||| ||| |||||| |||||| ||| |||||| ||||||| ||||||||||||||| |||| || ||||| ||||||||||| | || |||| |
|
|
| T |
6503293 |
caaagagagcgcaattaaattggggaaagcgctacctaatcattttaggtattgctcgaggcattctataccttcaccaggattctcgatttcgtgttat |
6503194 |
T |
|
| Q |
528 |
acaccgtgatctcaaagcaggcaatattctcttagctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
|| | |||||||||||| | ||||||||||| | |||| | |||||| |||||| |
|
|
| T |
6503193 |
tcatagagatctcaaagcaagtaatattctcttggatgaacatatgaatcctaaga |
6503138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 446 - 543
Target Start/End: Original strand, 47678782 - 47678879
Alignment:
| Q |
446 |
attgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatacaccgtgatctcaaa |
543 |
Q |
| |
|
||||||||| ||||| ||||||||| |||| |||||| || || |||| ||||||||||| ||||||||| ||| ||| | || |||||||||||| |
|
|
| T |
47678782 |
attgggaaagacgcttcaaaatcataaaagatattgcacgtggccttctttatcttcatgaagattctcgattacaaattgttcatcgtgatctcaaa |
47678879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 47689854 - 47689917
Alignment:
| Q |
248 |
agagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggta |
311 |
Q |
| |
|
||||||||||||||| | ||||| ||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
47689854 |
agagaaagactactaatttatgagtttgtctccaataaaagtcttgattatatcatatttggta |
47689917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 433 - 583
Target Start/End: Complemental strand, 12588 - 12438
Alignment:
| Q |
433 |
aaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattatacacc |
532 |
Q |
| |
|
||||| |||||| |||||| || ||||||||||||||| ||||||||||||||| |||| || ||||| ||||||||||||||||| |||| || | |
|
|
| T |
12588 |
aaagcgcaattaaattggggaaggcgctacaaaatcattttaggtattgctcgaggcattctttaccttcacgaggattctcgactacgtgttattcatc |
12489 |
T |
|
| Q |
533 |
gtgatctcaaagcaggcaatattctcttagctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
|||||||||||||| ||||||||||||| | |||| | |||||| |||||| |
|
|
| T |
12488 |
gtgatctcaaagcaagcaatattctcttggatgaagagatgaatcctaaga |
12438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 123 - 311
Target Start/End: Complemental strand, 12884 - 12697
Alignment:
| Q |
123 |
ttgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctgaacttcaacatcgaaatttagttag |
222 |
Q |
| |
|
|||| ||||||||||| || |||||||| || ||||||||||| || |||||||||||| | || || ||||| |||||||||| ||||||||||| || |
|
|
| T |
12884 |
ttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagt-attttagtggctaaacttcaacaccgaaatttagtaag |
12786 |
T |
|
| Q |
223 |
gttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtcttgactacttcatatttggta |
311 |
Q |
| |
|
||||| ||||| | ||||| |||||||||||||| | ||||| ||||||| |||||||||||||| ||||| || ||||||| |
|
|
| T |
12785 |
attactcggtttctgcctagaaggaagagaaagactacttatatatgagtttgttcataataaaagtcttgattactttatttttggta |
12697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 91 - 300
Target Start/End: Complemental strand, 5298 - 5089
Alignment:
| Q |
91 |
tttttagggtacgctctctaatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttg |
190 |
Q |
| |
|
|||| |||||| ||||| |||||||||| | |||| ||||||||||| || ||||||||||| ||||||||| || |||||||||||| | | || |
|
|
| T |
5298 |
ttttcagggtaggctcttcaatggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgttttta |
5199 |
T |
|
| Q |
191 |
atggctgaacttcaacatcgaaatttagttaggttacttggttttattatcgaagggagagaaagactactagtctatgaatttgttcccaataaaagtc |
290 |
Q |
| |
|
| ||| |||||||||| ||||| ||||||| ||||| |||||| | ||||| ||||||||||| || || ||||| |||||| |||||||||| |
|
|
| T |
5198 |
gttgctaaacttcaacacagaaatctagttagattactcggtttttgcctagaaggaagagaaagacttcttgtatatgagtttgtttgtaataaaagtc |
5099 |
T |
|
| Q |
291 |
ttgactactt |
300 |
Q |
| |
|
|||| ||||| |
|
|
| T |
5098 |
ttgattactt |
5089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 428 - 583
Target Start/End: Complemental strand, 4972 - 4817
Alignment:
| Q |
428 |
caaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgactacgcattat |
527 |
Q |
| |
|
|||||| ||| |||||| |||||| ||| |||||| ||||||| ||||||||||||||| |||| || ||||| ||||||||||| | || |||| |
|
|
| T |
4972 |
caaagagagcgcaattaaattggggaaagcgctacctaatcattttaggtattgctcgaggcattctataccttcaccaggattctcgatttcgtgttat |
4873 |
T |
|
| Q |
528 |
acaccgtgatctcaaagcaggcaatattctcttagctgaaaacatgaatgctaaga |
583 |
Q |
| |
|
|| | |||||||||||| | ||||||||||| | |||| | |||||| |||||| |
|
|
| T |
4872 |
tcatagagatctcaaagcaagtaatattctcttggatgaacatatgaatcctaaga |
4817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 419 - 560
Target Start/End: Original strand, 11224713 - 11224854
Alignment:
| Q |
419 |
tagatcctacaaagaaagcacaattagattgggaaaaacgctacaaaatcattaaaggtattgctcgaggtgttctctatcttcatgaggattctcgact |
518 |
Q |
| |
|
||||||| | ||| |||| || ||| |||||||||| ||||||||||||||| ||| ||||| ||||| |||| || |||||| ||||||||| ||| |
|
|
| T |
11224713 |
tagatccaataaacaaagaacgattggattgggaaaggcgctacaaaatcattggaggaattgcaagaggtcttctttaccttcatcaggattctcaact |
11224812 |
T |
|
| Q |
519 |
acgcattatacaccgtgatctcaaagcaggcaatattctctt |
560 |
Q |
| |
|
|| |||||||| |||||||| |||||| | || |||||||| |
|
|
| T |
11224813 |
tcgtattatacatcgtgatcttaaagcaagtaacattctctt |
11224854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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