View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_34 (Length: 201)
Name: NF1461_low_34
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 3275848 - 3275678
Alignment:
| Q |
15 |
cacagatagaaagagtgaaatgtagaatcaaatgcacgaatttcaaacggtccctaactttacataaaaccagcaaactagggaaatggattcttaaggg |
114 |
Q |
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| T |
3275848 |
cacaaatagaaagagtgaaatgtagaatcaaatgcacgaatttcaaacggtccctaactttacataaaaccagcaaactagggaaatggattcttaagtg |
3275749 |
T |
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| Q |
115 |
aaagtctttcaatttttctcaattgttacatcaaaaccattaaacacgagtgagaaaaagagacataaaat |
185 |
Q |
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| T |
3275748 |
aaagtctttcaatttttctcaattgttacatcaaaaccattaaacacgagtgagaaaaagagacataaaat |
3275678 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 30364364 - 30364313
Alignment:
| Q |
126 |
atttttctcaattgttacatcaaaaccattaaacacgagtgagaaaaagaga |
177 |
Q |
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| T |
30364364 |
atttttctcaattgttacatctacaccattaaacatgagagagaaaaagaga |
30364313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 5179379 - 5179315
Alignment:
| Q |
121 |
tttcaatttttctcaattgttacatcaaaaccattaaacacgagtgagaaaaagagacataaaattg |
187 |
Q |
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| T |
5179379 |
tttccatttttctcaattgttacatctacatcattaaacatga--gagaaaaagagatataaaattg |
5179315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 36441726 - 36441784
Alignment:
| Q |
128 |
ttttctcaattgttacatcaaaaccattaaacacgagtgagaaaaagagacataaaatt |
186 |
Q |
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| T |
36441726 |
ttttctcaattgttatattaaaatcattaaacatgaaagagaaaaagagatataaaatt |
36441784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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