View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_4 (Length: 545)
Name: NF1461_low_4
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 40 - 463
Target Start/End: Complemental strand, 39809877 - 39809454
Alignment:
| Q |
40 |
aagggcttgtacaataaacacttatgatataactttaagcatttaattaaattgtttatccgagtctaagaataaagtataccttaagaggataatataa |
139 |
Q |
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| T |
39809877 |
aagggcttgtacaataaacacttatgatataactttaagcatttaattaaattgtttatccgagtctaagaataaagtataccttaagaggataatataa |
39809778 |
T |
|
| Q |
140 |
agtttcttttcctttttgtcatcagaccatatttccaggctagaagcatgcctctgaagttttttctgttgagtctcaatttgtattatctccccaatgc |
239 |
Q |
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| T |
39809777 |
agtttcttttcctttttgtcatcagaccatatttccaggctagaagcatgcctctgaagttttttctgttgagtctcaatttgtattatctccccaatgc |
39809678 |
T |
|
| Q |
240 |
catctcccttttctccttctgacaactcttcagacaaatcctctgttgcatcccttcgtccttgctctctttcccatcttctgtatgctaacctttgaag |
339 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809677 |
catctcccttttctccctctgacaactcttcagacaaatcctctgttgcatcccttcgtccttgctctctttcccatcttctgtatgctaacctttgaag |
39809578 |
T |
|
| Q |
340 |
ttcctctccttccacctacaaagtatgcctcattagtactctactagtttcaccaaacaaatcaagtgtttgagctgaaacactcaaaaaatgtagaaga |
439 |
Q |
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| T |
39809577 |
ttcctctccttccacctacaaagtatgcctcattagtactctactagtttcaccaaacaaatcaagtgtttgagctgaaacactcaaaaaatgtagaaga |
39809478 |
T |
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| Q |
440 |
ctaattaagagttcaaactttggt |
463 |
Q |
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| T |
39809477 |
ctaattaagagttcaaactttggt |
39809454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39809942 - 39809902
Alignment:
| Q |
1 |
gccatgataacaatcacaaatagcttataacttataggaaa |
41 |
Q |
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| T |
39809942 |
gccatgataacaatcgcaaatagcatataacttatacgaaa |
39809902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 359
Target Start/End: Complemental strand, 15796025 - 15795914
Alignment:
| Q |
248 |
ttttctccttctgacaactcttcagacaaatcctctgttgcatcccttcgtccttgctctctttcccatcttctgtatgctaacctttgaagttcctctc |
347 |
Q |
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||||||||||||||||| ||||| |||| || ||||| ||||| || |||||||| ||||| ||||||||||||| |||||| || || | |||||| | |
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| T |
15796025 |
ttttctccttctgacaagtcttctgacatgtcttctgtagcatctctgcgtccttgttctctctcccatcttctgtttgctaatctctgtacttcctccc |
15795926 |
T |
|
| Q |
348 |
cttccacctaca |
359 |
Q |
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||||| ||||| |
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| T |
15795925 |
attccaactaca |
15795914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 15796153 - 15796103
Alignment:
| Q |
120 |
accttaagaggataatataaagtttcttttcctttttgtcatcagaccata |
170 |
Q |
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|||||| ||||| ||||||||| |||||||| ||||| ||||||||||||| |
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| T |
15796153 |
accttatgaggacaatataaagcttcttttcatttttatcatcagaccata |
15796103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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