View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_6 (Length: 494)
Name: NF1461_low_6
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 13 - 491
Target Start/End: Original strand, 1135771 - 1136246
Alignment:
| Q |
13 |
accatcaccatggagaacaataccgatcaacgaagcatagcttcatcgtattttaattttttcaaagctcaactccatctactaaacttctttacttatg |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1135771 |
accatcaccatggagaacaataccgatcaacgaagcatagcttcatcgtattttaattttttcaaagctcaactccatctactaaacttctttacttatg |
1135870 |
T |
|
| Q |
113 |
ccctaatctttagttttggtttactcattggtatcaaactcactttctgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1135871 |
ccctaatctttagttttggtttactcattggtatgacactcactttttgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatc |
1135970 |
T |
|
| Q |
213 |
cttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatt |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1135971 |
cttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatt |
1136070 |
T |
|
| Q |
313 |
tctatcaaacaaaattgtccggctattactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgagg |
412 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136071 |
tctatcaaacaaaattgtccggc---tactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgagg |
1136167 |
T |
|
| Q |
413 |
atgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcat |
491 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136168 |
atgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcat |
1136246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 491
Target Start/End: Original strand, 1138980 - 1139457
Alignment:
| Q |
13 |
accatcaccatggagaacaataccgatcaacgaagcatagcttcatcgtattttaattttttcaaagctcaactccatctactaaacttctttacttatg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
1138980 |
accatcaccatggagaacaataccgatcatcgaaacataacctcatcatatcttaattttttcaaagctcaactccatctactaaacttctttactta-g |
1139078 |
T |
|
| Q |
113 |
ccctaatctttagttttggtttactcattggtatcaaactcactttctgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatc |
212 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||| |||||||||| || |||||||||||||| |
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|
| T |
1139079 |
ccctaatctttggttttggtttactcatcggtatcacactcactttttgtgttaaagatttttcattcaacattcaaatccataaattccaagatccatc |
1139178 |
T |
|
| Q |
213 |
cttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatt |
312 |
Q |
| |
|
||| |||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
1139179 |
ctttagcctcaatccaccacctgatttttcacattctcctccaatactactatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatt |
1139278 |
T |
|
| Q |
313 |
tctatcaaacaaaattgtccggctattactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgagg |
412 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1139279 |
tctatcaaacaaaattgttcggctattactcataaccttacttcaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgagg |
1139378 |
T |
|
| Q |
413 |
atgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcat |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1139379 |
atgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcat |
1139457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 119 - 485
Target Start/End: Complemental strand, 54479643 - 54479286
Alignment:
| Q |
119 |
tctttagttttggtttactcattggtatcaaactcactttctgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatccttaag |
218 |
Q |
| |
|
||||| ||| ||||||||||||||| |||| ||||||||| ||||| ||| || |||| |||||||||||||||||||| | ||||||||||||||| || |
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|
| T |
54479643 |
tctttggttgtggtttactcattggcatcacactcactttgtgtgtcaaaaatatttcattcaactttcaaatccaaaaatcccaagatccatcctttag |
54479544 |
T |
|
| Q |
219 |
cctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatttctatc |
318 |
Q |
| |
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| ||||||||||||||| | |||| |||||||||||||||||| || |||||| ||||| ||| ||| |||||||||| |||||||||||| |
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|
| T |
54479543 |
cttcaatccaccacctcgtgtttctcattctcctccaatattatcatacaacatttcaaa---------tgagcattataaccaaacaaatatttctatc |
54479453 |
T |
|
| Q |
319 |
aaacaaaattgtccggctattactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgaggatgaat |
418 |
Q |
| |
|
||| || |||| || | ||||| |||||||||||||| |||| ||| |||| || || |||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
54479452 |
aaaaaatattgcttggttgttactaataaccttacttcacatgggttgaaagacttgttgaagattcctatggctatgcatgacatgaatgaggatgaat |
54479353 |
T |
|
| Q |
419 |
tattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgc |
485 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
54479352 |
tgttttggagagcttcattggaacctatgattcataaaactccattcaaacaaacaccaaaggttgc |
54479286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 350 - 488
Target Start/End: Complemental strand, 31269290 - 31269152
Alignment:
| Q |
350 |
ttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgaggatgaattattttggagagcttcattggctcctatgat |
449 |
Q |
| |
|
||||||||||||| ||||| ||||| || |||||||| | |||||||||||| ||||| || || |||||||||||||||||||| || ||||||||| |
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|
| T |
31269290 |
ttacttcaaatgggttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgat |
31269191 |
T |
|
| Q |
450 |
tcataaaactccatttaaacaaacaccaaaggttgcatt |
488 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||| |
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|
| T |
31269190 |
tcataaacctccattcaaacaaataccaaaggttgcatt |
31269152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 228
Target Start/End: Complemental strand, 31269494 - 31269394
Alignment:
| Q |
128 |
ttggtttactcattggtatcaaactcactttctgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatccttaagcctcaatcc |
227 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| | ||| || |||| ||||| |||||| ||||| | || ||||||||| | || ||| ||||||| |
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|
| T |
31269494 |
ttggtttactcattggtatcactctcactttttgtctcaaaaatgtttcattcaattttcaattccaacaatttcaagatccaccttttagcttcaatcc |
31269395 |
T |
|
| Q |
228 |
a |
228 |
Q |
| |
|
| |
|
|
| T |
31269394 |
a |
31269394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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