View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1461_low_8 (Length: 445)
Name: NF1461_low_8
Description: NF1461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1461_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 427
Target Start/End: Complemental strand, 43440007 - 43439593
Alignment:
| Q |
12 |
atgaaggaaggagccttaaaatgaatttttgtgatactttatatttgttccattccataactcaatatcaatttaagcttcgagcatattaaaaaagtta |
111 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||| |
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| T |
43440007 |
atgaaggaaggagccttaaaatgagttcttgtgatactttatatttgttccattccataactcaaaatcaatttaagcttcgaacatgttcaaaaagttg |
43439908 |
T |
|
| Q |
112 |
tacattacaagtttaagcacaattaacactgaaccaactatttccagcttacaatgtctataaatcatggtctcaaataaaatgagcagccttactgatg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||| |
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| T |
43439907 |
tacattacaagtttaagcacaattaacactgaaccaattattgctggcttacaacgtctataaatcatggactcaaataaaacgagcagccttggtgatg |
43439808 |
T |
|
| Q |
212 |
actcattctccatgaaatgcagacaagcttgccgatcaggcctgagagcagaaaatgacgcgacagagttgcatgaacaaaattcaactcaaactaacga |
311 |
Q |
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| T |
43439807 |
actcattctgcatgaagtgcagacaagcttgctgatcaggcctgagagcagaaaatgacgcgacagagctgcaag-acaaaattcaactcaaactaaaga |
43439709 |
T |
|
| Q |
312 |
ttttttatgtgaaaacaaagctaactggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagcaaaatgctttctggttttacaact |
411 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43439708 |
ttttttatgtgaaaacaaagataacgggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagcaaaatgctttctggttttacaact |
43439609 |
T |
|
| Q |
412 |
ctatgaacaacactaa |
427 |
Q |
| |
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| T |
43439608 |
ctatgaacaacactaa |
43439593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 43742539 - 43742134
Alignment:
| Q |
12 |
atgaaggaaggagccttaaaatgaatttttgtgatactttatatttgttccattccataactcaatatcaatttaagcttcgagcatattaaaaaagtta |
111 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||| |
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| T |
43742539 |
atgaaggaaggagccttaaaatgagttcttgtgatactttatatttgttccattccataactcaaaatcaatttaagcttcgaacatgttcaaaaagttg |
43742440 |
T |
|
| Q |
112 |
tacattacaagtttaagcacaattaacactgaaccaactatttccagcttacaatgtctataaatcatggtctcaaataaaatgagcagccttactgatg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||||||| ||||||||||| |||||||||| ||||| |
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| T |
43742439 |
tacattacaagtttaagcacaattaacactgaaccaattattgctggcttacaacgtctataaatcatggactcaaataaaacgagcagccttggtgatg |
43742340 |
T |
|
| Q |
212 |
actcattctccatgaaatgcagacaagcttgccgatcaggcctgagagcagaaaatgacgcgacagagttgcatgaacaaaattcaactcaaactaacga |
311 |
Q |
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| T |
43742339 |
actcattctgcatgaagtgcagacaagcttgccgatcaggcctgagagcagaaaatgacgcgacagagctgcaag-acaaaattcaactcaaactaaaga |
43742241 |
T |
|
| Q |
312 |
ttttttatgtgaaaacaaagctaactggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagcaaaatgctttctggttttacaact |
411 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43742240 |
ttttttatgtgaaaacaaagataacgggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagaaaaatgctttctggttttacaact |
43742141 |
T |
|
| Q |
412 |
ctatgaa |
418 |
Q |
| |
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||||||| |
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|
| T |
43742140 |
ctatgaa |
43742134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 37949847 - 37949934
Alignment:
| Q |
327 |
caaagctaactggcctgacaagatcaatgttatgagatcagttgttccaggttgaccaagcaaaatgctttctggttttacaactctat |
415 |
Q |
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||||| ||||| || |||||||||||||| | ||| || |||||||| |||||| |||||||||| ||| | ||||||||||||||| |
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| T |
37949847 |
caaagttaactagcttgacaagatcaatgatgtgaaattagttgttctgggttgatgaagcaaaatg-tttatagttttacaactctat |
37949934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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