View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14620_high_1 (Length: 476)
Name: NF14620_high_1
Description: NF14620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14620_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 106 - 474
Target Start/End: Complemental strand, 7766373 - 7766005
Alignment:
| Q |
106 |
taactgggccggtatcaatttgattgatgttttcaacaaaaatatggcggccatcatgagcagaaacaggaaagacatcacaagtaggttgcacataatt |
205 |
Q |
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| T |
7766373 |
taactgggccagtatcaatttgattaatgttttcaacaaaaatatggcggccatcatgagcagaaacaggaaagacatcacaagtaggttgcacataatt |
7766274 |
T |
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| Q |
206 |
tgttccgaacattcttgatggagtgtcgttgatagaaactggagtgaaatcaaaagcatccattatatcaagagcatctaaaattatttcgttgatacca |
305 |
Q |
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| T |
7766273 |
tgttccgaacattcttgatggagtgtcgttgatagaaactggagtgaaatcaaaagcatccattatatcaagagcatctaaaattatttcattgatacca |
7766174 |
T |
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| Q |
306 |
ccatcgttgtcatgattccacggtacaagtgtgactcccaaaggtattaatcttcttgtatgatggttttgttgatccattgctttatttttgcttcgtc |
405 |
Q |
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| T |
7766173 |
ccatcgttgtcatgattccacggtacaagtgtgactcccaaaggtattaatcttcttgtatgatggttttgttgatccattgctttatttttgcttcgtc |
7766074 |
T |
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| Q |
406 |
tttctaggtactgaaaagggttaataacgaactgataagaaagaagccaaacaaagttgtttcatctca |
474 |
Q |
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| T |
7766073 |
tttctaggtaccgaaaagggttaataacgaactgataagaaagaagacaaacaaagttgtttcatctca |
7766005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 360
Target Start/End: Complemental strand, 7756510 - 7756395
Alignment:
| Q |
248 |
agtgaaatcaaaagcatccattatatcaagagcatctaaaattatttcgttgataccaccatcg---ttgtcatgattccacggtacaagtgtgactccc |
344 |
Q |
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| T |
7756510 |
agtgaaaccaaaagcatccattatatcaagagcatcaaggattaattcattgacaccaccatcgtaattaatacgattccaaggtacaagtgtgactccc |
7756411 |
T |
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| Q |
345 |
aaaggtattaatcttc |
360 |
Q |
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| T |
7756410 |
aaaggtattaaccttc |
7756395 |
T |
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