View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14620_high_2 (Length: 346)
Name: NF14620_high_2
Description: NF14620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14620_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 13045564 - 13045887
Alignment:
| Q |
18 |
acctaggtatatccactgtaagataatcatatttttctttaccatcctgtaccaatctaacatttcagaactattatgtccaatatttactagtgagatg |
117 |
Q |
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| T |
13045564 |
acctaggtatatccactgtaagataatcatatttttctttaccatcctgtaccaatctaacacttcggagctattatatccaatatttactagtgagatg |
13045663 |
T |
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| Q |
118 |
ctgataactgacaggaagagagttgggaggatcacttgtggccatgggtaaagcacatttattagagacttaaaagcatattttttagcccttacattta |
217 |
Q |
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| T |
13045664 |
ctgataactgacaggaagagagttgggaggattgctcgtggccatgagtaaagcacatttattagagacttaaaagcat-ttttttagcccttacattta |
13045762 |
T |
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| Q |
218 |
acaaaaatagtgtttttagtcattaattagggact-aaaaaagcacatttttgtaaggactaaaaattaatgaatttaaatagggtgactgtaaaacagt |
316 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13045763 |
acaaaaatagtgtttttagtcattaattagggactaaaaaaagcacatttttgtaaggactaaaaattaatgaatttaaatagggtgactgtaaaacagt |
13045862 |
T |
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| Q |
317 |
catctcaagagatagttagtataat |
341 |
Q |
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||||||||||||||||||||||||| |
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| T |
13045863 |
catctcaagagatagttagtataat |
13045887 |
T |
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