View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14620_high_4 (Length: 322)
Name: NF14620_high_4
Description: NF14620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14620_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 6270876 - 6270566
Alignment:
| Q |
1 |
cttacttctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatccaccaatcccagaaattccaacaagacaaaaatctttcctt |
100 |
Q |
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| T |
6270876 |
cttacctctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatccaccaatcccagaaattccaacaagacaaaaatctttcctt |
6270777 |
T |
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| Q |
101 |
ccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatccaaattccccaaactaccctcatcttcctcactagacctcacag |
200 |
Q |
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| T |
6270776 |
ccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatccaaattccccaaactaccctcatcttcctcactagacctcacag |
6270677 |
T |
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| Q |
201 |
cttcctcaacccacccaacaccaccaacgccaatcttcatccctccaaaaaaccgctccatcctccggttcgactcctcaatccggtcaaaccgctccgt |
300 |
Q |
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| T |
6270676 |
ctccctcaacccacccaacaccaccaacgccaatcttcatccctccaaaaaaccgctccatcctccggttcgactcctcaatccggtcaaaccgctccgt |
6270577 |
T |
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| Q |
301 |
catctctgctc |
311 |
Q |
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|||||| |||| |
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| T |
6270576 |
catctcggctc |
6270566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 6261864 - 6261687
Alignment:
| Q |
1 |
cttacttctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatccaccaatcccagaaattccaacaagacaaaaatctttcctt |
100 |
Q |
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||||| |||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||| ||| ||||||| || ||||| | ||| |
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| T |
6261864 |
cttacatctcacttgttcatctttacaaatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaacccataaatcctctctt |
6261765 |
T |
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| Q |
101 |
ccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatccaaattccccaaactaccctca |
178 |
Q |
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| T |
6261764 |
cccataaccatctccttaactttcttcttccccaaatccaaaccaacactcaaactcaaattcccataattaccctca |
6261687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 6261660 - 6261600
Alignment:
| Q |
190 |
agacctcacagcttcctcaacccacccaacaccaccaacgccaatcttcatccctccaaaa |
250 |
Q |
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||||||||||||||||| |||||||| |||| || ||||||||||||||| | |||||| |
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| T |
6261660 |
agacctcacagcttcctgcacccaccctccacctcccacgccaatcttcatctcaccaaaa |
6261600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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