View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14620_high_6 (Length: 244)
Name: NF14620_high_6
Description: NF14620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14620_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40668756 - 40668532
Alignment:
| Q |
1 |
tcatcaccagtattccatttggcaaggccaaagtcagctagctgcattataaatcatatatatttcagttaatcaaccattcacctactatatagtattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| || || || || | | |||||||||||||||||||||||||||||||| |
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| T |
40668756 |
tcatcaccagtattccatttggcaaggccaaagtcagctagctgcaccatgcattatttagacaa-atttaatcaaccattcacctactatatagtattt |
40668658 |
T |
|
| Q |
101 |
gttttagttctctcctaatcctcctttatcaagttgttcatgcttatttttgtacattgactgatctagtttcgtaaatgaagcctagtaccaattatat |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
40668657 |
gttttagttctctcctaatcctcctttatcaatttgttcatacttatttctgtacattaactgatctagtttcgtaaatgaagcctagtacc--ttatat |
40668560 |
T |
|
| Q |
201 |
tatatatctaaggaaaacattgaatgaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
40668559 |
tatatatctaaggaaaacattgaatgaa |
40668532 |
T |
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