View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14620_low_4 (Length: 343)
Name: NF14620_low_4
Description: NF14620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14620_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 44085628 - 44085934
Alignment:
| Q |
19 |
ggtgcgaaaagtaatggtctaaaatttatcaattattctatttttgaatcctgcccagtnnnnnnnccacgacaactggacccactaacgaaaccagttc |
118 |
Q |
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| T |
44085628 |
ggtgcgaaaagtaatgctctaaaatttatcaattattctatttttgaatcctgcccagtaaaaaaaccacgacaactggacccactaacgaaaccagttc |
44085727 |
T |
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| Q |
119 |
tgttctttcttgtcggagaaagaaacacggtgatgtttcacaccaatgatttcagttccacgatcgagaaattttcgtctctgatttcaaactgtgttac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44085728 |
tgttctttcttgtcggagaaagaaacacggtgatgtttcacaccaatgatttcagttccacgatcgagaaattttcgtctctgatttcaaactgtgtttc |
44085827 |
T |
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| Q |
219 |
ggcgaaaagtttgaagcatggaaaagcattgcactctcaactcatcaaaaccgcgcttttctttgaaacttttctcgcaaatggactcattgatttatat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44085828 |
ggcgaaaagtttgaagcatggaaaagcattgcactctcaactcatcaaaaccgcgcttttctttgaaacttttctcgcaaacggactcattgatttatat |
44085927 |
T |
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| Q |
319 |
tccaaat |
325 |
Q |
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||||||| |
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| T |
44085928 |
tccaaat |
44085934 |
T |
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