View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14622_high_2 (Length: 238)
Name: NF14622_high_2
Description: NF14622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14622_high_2 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38638618 - 38638840
Alignment:
| Q |
1 |
tcgctaataaataaagtgcatcagttggctaaagaaaaagatgtagcagcccttgataagatgtcacgttcagaggttggtagttagtttagtttcctat |
100 |
Q |
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| T |
38638618 |
tcgctaataaataaagtgcatcagttggctaaagaaaaagatatagcagcccttgataagatgtcacgttcagaggttggtagttagtttagtttcctat |
38638717 |
T |
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| Q |
101 |
a--tgttatttatttcacttacaaaaatctttagttcatattggaataaggttcttatttcataagggtttgtttttgttggttgctttggtgtgtttag |
198 |
Q |
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| T |
38638718 |
atatgttatttatttcacttacaaaaaactttagttcatattggaataaggttcttatttcataagggtttgtttttgttggttgctttggtgtgtttag |
38638817 |
T |
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| Q |
199 |
gttgagacgtttatgttaaaatg |
221 |
Q |
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| T |
38638818 |
gttgagacgtttatgttaaaatg |
38638840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 38634370 - 38634474
Alignment:
| Q |
7 |
ataaataaagtgcatcagttggctaaagaaaaagatgtagcagcccttgataagatgtcacgttcagaggttggtagttagtttagtttcctatatgtta |
106 |
Q |
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| T |
38634370 |
ataaataaagtccatcagctggcagaagaaaaagatgtatcaaccctagatgagatgtcaaattcagaggttggtagttggtttagttcgctatatgtta |
38634469 |
T |
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| Q |
107 |
tttat |
111 |
Q |
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| T |
38634470 |
tttat |
38634474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 38692134 - 38692202
Alignment:
| Q |
35 |
aaaaagatgtagcagcccttgataagatgtcacgttcagaggttggtagttagtttagtttcctatatg |
103 |
Q |
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| T |
38692134 |
aaaaagatgtaagagtccttgatgagatgtcaagttcagaggctggtaattggtttagttccatatatg |
38692202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 13579 - 13754
Alignment:
| Q |
7 |
ataaataaagtgcatcagttggctaaagaaaaagatgtagcagcccttgataagatgtcacgttcagaggttggtagttagtttagtttcctatatgtta |
106 |
Q |
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| T |
13579 |
ataaataaagtacatcaactgagtgaagaaaaagatgtaacactccttgatgagatgtcaagttcagaggttggtaattgtattagt----tacatggta |
13674 |
T |
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| Q |
107 |
tttatttcacttacaaaaatctttagttc-atattggaataaggttcttatttcataagggtttgtttttgttggttgcttt |
187 |
Q |
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| T |
13675 |
tttatttcactt--aaaaaacttctgttcaatattggaataatcttctgctttgataagggttttgttttgttggttgcttt |
13754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 40766959 - 40766881
Alignment:
| Q |
32 |
aagaaaaagatgtagcagcccttgataagatgtcacgttcagaggttggtagttagtttagtttcctatatgttattta |
110 |
Q |
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| T |
40766959 |
aagaaaaagatgtagcatcccttgatgagatttcttgttcagaggtctgttgttggtttaagtccctatatgttattta |
40766881 |
T |
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