View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14622_low_2 (Length: 350)
Name: NF14622_low_2
Description: NF14622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14622_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 52390975 - 52391295
Alignment:
| Q |
1 |
ctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagacacactaccaaattta |
100 |
Q |
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| T |
52390975 |
ctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagacacactaccaaaaa-a |
52391073 |
T |
|
| Q |
101 |
nnnnnnngacatgatagatggtataatgccttnnnnnnnnnggtggtatgctattgaatata--ttgttggtcattaggaatgaaaacaagggaggagaa |
198 |
Q |
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| T |
52391074 |
aaaatttgacatgatagatggtataatgccttaaaaaaaaaggtggtatgctattgaatagaatatattggtcattaggaatgaaaacaagggaggagaa |
52391173 |
T |
|
| Q |
199 |
taaatataattgttgacagaaagaggtagtagaaaataatcatcatattacaaacatggataattttctttannnnnnnncgaacatgacaaggnnnnnn |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52391174 |
taaatataattgttgacagaaagaggtagtagaaaataatcatcatattacaaacatggataattttctttattttttttcgaacatgacaaggaaaaaa |
52391273 |
T |
|
| Q |
299 |
ntgataggaccaattcttaaaa |
320 |
Q |
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||||||||||||||||||||| |
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| T |
52391274 |
ttgataggaccaattcttaaaa |
52391295 |
T |
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