View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14623_high_17 (Length: 314)

Name: NF14623_high_17
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14623_high_17
NF14623_high_17
[»] chr7 (1 HSPs)
chr7 (8-296)||(49042299-49042587)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 49042587 - 49042299
Alignment:
Q  8 cagcacagacatggataaagaaagactaacggcggagatggatttcaaagattcaacctccgccgttatcaaaatccggcgacgtttaccggattttcta 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49042587 cagcatagacatggataaagaaagactaacggcggagatggatttcaaagattcaacctccgccgttatcaaaatccggcgacgtttaccggattttcta 49042488  T
Q  108 caaacggtgaaactcaagtacgtaaagttaggttatggctattcatgcaatgccacaaccattctcattttcacattcgtcgtccctctcttactcttcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49042487 caaacggtgaaactcaagtacgtaaagttaggttatggctattcatgcaatgccacaaccattctcattttcacattcgtcgtccctctcttactcttcc 49042388  T
Q  208 tcaccgttcagttccaactcaccgatctaaaactccaccgtctctcacaactcttactcgaacacaccgtccaacttgacaccgataca 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49042387 tcaccgttcagttccaactcaccgatctaaaactccaccgtctctcacaactcttactcgaacacaccgtccaacttgacaccgataca 49042299  T

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