View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_high_31 (Length: 235)
Name: NF14623_high_31
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 15964419 - 15964212
Alignment:
| Q |
14 |
gagaagaagaatgcaacattgtctccagtgtcaaatgaacaatctattttatatttaaagattgtattggcaaacattggaaacccattagcaatatttg |
113 |
Q |
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| T |
15964419 |
gagaagaagaatgcaacattgtctccagtgtcaaatgaacaatctattttatatttaaagattgtattagcaaacattggaaacccaccagcaatatttg |
15964320 |
T |
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| Q |
114 |
atggaccactgattatatctttctttttacctccaggagcataatttacaaccatatacttatctttcacaaatatgtaacattcattcgctttggatga |
213 |
Q |
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| T |
15964319 |
ttggagcactgattatatctttcttttgacctccaggagcataatttacaaccatatacttttgtttcacaaatatgtaacattcattcgctttggatga |
15964220 |
T |
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| Q |
214 |
acaaaatg |
221 |
Q |
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|||||||| |
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| T |
15964219 |
acaaaatg |
15964212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 17735499 - 17735671
Alignment:
| Q |
29 |
acattgtctccagtgtcaaatgaacaatctattttatatttaaagattgtattggcaaacattggaaacccattagcaatatttgatggaccactgatta |
128 |
Q |
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| T |
17735499 |
acattgtttccgatgtcaaatgaacaatctatttgatattgaaataaggttcgtgcaaacattggaaacccatcagcaatacttgttggaccactaatta |
17735598 |
T |
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| Q |
129 |
tatctttctttttacctccaggagcataatttacaaccatatacttatctttcacaaatatgtaacattcatt |
201 |
Q |
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| T |
17735599 |
tatctttctttttgcctccaggagcataattcacaaccacatacttatctttcacaaagatgtaacattcatt |
17735671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 17592947 - 17593034
Alignment:
| Q |
134 |
ttctttttacctccaggagcataatttacaaccatatacttatctttcacaaatatgtaacattcattcgctttggatgaacaaaatg |
221 |
Q |
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| T |
17592947 |
ttctttttgcctccaggggcataattcacaaccacatacttatttttcacaaacacgtaacattcattctctttagatgaacagaatg |
17593034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 17699494 - 17699575
Alignment:
| Q |
134 |
ttctttttacctccaggagcataatttacaaccatatacttatctttcacaaatatgtaacattcattcgctttggatgaac |
215 |
Q |
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| T |
17699494 |
ttctttttgcctccaggggcataattcacaaccacatacttatttttcacaaacacataacattcattctctctagatgaac |
17699575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 17726777 - 17726938
Alignment:
| Q |
14 |
gagaagaagaatgcaacattgtctccagtgtcaaatgaacaatctattttatatttaaagattgtattggcaaac-attggaaacccattagcaatattt |
112 |
Q |
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|||||||||||||| |||||||||||||||||||| |||| | |||||| ||||| ||| || || |||||| | || |||||||| | || ||| |
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| T |
17726777 |
gagaagaagaatgctacattgtctccagtgtcaaaggaactacctatttgatattgaaacggcgtttttgcaaacaactgaaaacccatcaacataatta |
17726876 |
T |
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| Q |
113 |
gatggaccactgattatatctttctttttacctccaggagcataatttacaaccatatactt |
174 |
Q |
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| T |
17726877 |
gtcggaccactaattatttggttctttttctctccaggagcataattcacaaccacatactt |
17726938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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