View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_high_36 (Length: 222)
Name: NF14623_high_36
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 56471413 - 56471605
Alignment:
| Q |
14 |
gcaaaggcctgatgatacctgttctgcagtaaaaaggacagcgcagttattccattaacgtaatgttgatttaattattattattaataaagaaataaaa |
113 |
Q |
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| T |
56471413 |
gcaaaggcctgatgatatctgttctgcagtaaaaaggacagcgtagttattccattaacgtaatgttgatttaattattattattaataaagaaat-aaa |
56471511 |
T |
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| Q |
114 |
aacgaaggaagcaataacatgatagaatggtgcatatatacttgtggttaagcatgagatggttggtgaggagaagcttgaaaccagcaatatt |
207 |
Q |
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| T |
56471512 |
aacgaaggaagcaataacatgatagaatggtgcatatatacttgtggtcaagcatgagatggttggtgaggagaagcttgaaaccagcaatatt |
56471605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 153412 - 153369
Alignment:
| Q |
164 |
agcatgagatggttggtgaggagaagcttgaaaccagcaatatt |
207 |
Q |
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| T |
153412 |
agcatgagattgttggtgagtagaagtttgaaaccagcaatatt |
153369 |
T |
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