View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_high_6 (Length: 520)
Name: NF14623_high_6
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 190 - 502
Target Start/End: Complemental strand, 39825531 - 39825218
Alignment:
| Q |
190 |
tcctaacctcagaagaaaagggtatctttctcttttgtagccatgaaaatgatttctgtttttcagtacatatctgataaagcctgttaccttttttaag |
289 |
Q |
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| T |
39825531 |
tcctaacctcagaagaaaagggtatctttctcttttgtagccatgaaaatgatttctgtttttcagtacatatctgataaagcctgttaccttttttaag |
39825432 |
T |
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| Q |
290 |
aacggtctcttttacttaatttgacttcaaatatgttttttcgggatatgagtttattcatgatgagtctcttttagcaagaaacaagaatattattatc |
389 |
Q |
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| T |
39825431 |
aacggtctcttttacttaatttgacttcaaatatgttttttcgggatatgagtttattcatgatcagtctcttttagcaagaaacaagaatattattatc |
39825332 |
T |
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| Q |
390 |
cccacttataaacctgaaacgt-cctttttctttcttcctttgattcatgtgcagaatttttcacataaactctactccaaaaattggatctcttcccaa |
488 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39825331 |
cccacttataaacctgaaacgtccctttttctttcttcctttgattcatgtgcagaatttttcacataaactctactccaaaaattggatctcttcccaa |
39825232 |
T |
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| Q |
489 |
tgactaaggtatct |
502 |
Q |
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|||||||||||||| |
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| T |
39825231 |
tgactaaggtatct |
39825218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 39825702 - 39825584
Alignment:
| Q |
13 |
gtgagatgaaagagtgaatcaaatacacgacaaaatctcaactctcaaatacaaacaattttgtggccggctacttcacatgccaccaaaatccaatact |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39825702 |
gtgagatgaaagagtgaatcaaatacacgacaaaatctcaactc--aaatacaaacaattttgtggccggctacttcacatgccaccaaaatccaatact |
39825605 |
T |
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| Q |
113 |
acaatttacagattacaggta |
133 |
Q |
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||||||||||||||||||||| |
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| T |
39825604 |
acaatttacagattacaggta |
39825584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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