View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14623_low_1 (Length: 755)

Name: NF14623_low_1
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14623_low_1
NF14623_low_1
[»] chr2 (11 HSPs)
chr2 (9-508)||(44748239-44748741)
chr2 (332-508)||(44749139-44749314)
chr2 (122-262)||(35160613-35160752)
chr2 (324-426)||(44625133-44625235)
chr2 (287-436)||(44615886-44616034)
chr2 (336-386)||(39379548-39379598)
chr2 (333-374)||(39131282-39131323)
chr2 (315-371)||(2363527-2363583)
chr2 (334-386)||(39372205-39372257)
chr2 (342-392)||(39419835-39419885)
chr2 (324-373)||(39493082-39493131)
[»] scaffold0283 (1 HSPs)
scaffold0283 (277-358)||(3434-3515)
[»] chr8 (7 HSPs)
chr8 (277-358)||(44947455-44947536)
chr8 (192-259)||(4929775-4929841)
chr8 (192-261)||(21581249-21581317)
chr8 (192-259)||(4929336-4929402)
chr8 (650-738)||(44951700-44951788)
chr8 (35-129)||(16251708-16251803)
chr8 (277-314)||(45343688-45343725)
[»] chr6 (5 HSPs)
chr6 (192-261)||(15652745-15652813)
chr6 (192-261)||(15670577-15670645)
chr6 (192-259)||(15887813-15887878)
chr6 (210-261)||(15888252-15888302)
chr6 (206-259)||(4749184-4749236)
[»] chr3 (2 HSPs)
chr3 (192-261)||(36143818-36143886)
chr3 (207-259)||(10026838-10026889)
[»] scaffold0011 (1 HSPs)
scaffold0011 (192-257)||(19017-19082)
[»] chr4 (3 HSPs)
chr4 (192-259)||(13923714-13923780)
chr4 (10-129)||(14275794-14275914)
chr4 (192-259)||(13924134-13924200)
[»] chr5 (1 HSPs)
chr5 (277-390)||(17061170-17061284)
[»] chr7 (1 HSPs)
chr7 (196-261)||(18269144-18269206)


Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 508
Target Start/End: Original strand, 44748239 - 44748741
Alignment:
Q  9 attatactgaaaggggcatttattgatttatttcatttatacaccaaaatgttgtaagctaaaatttggaggattatttaa-gtaccacagtggcaatcg 107  Q
    |||||| |||||||   |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |||||||||||    
T  44748239 attatattgaaaggtatatttattgttttatttcatttatacaccaaaatgttgtatgctaaaatttggaggattatttaacgaaccatagtggcaatcg 44748338  T
Q  108 aaaatttacatatgaaattactttggtgagctaaccgaaaactttggcaaccaaatggtaatgaatttcttaannnnnnnnnnn--aataaacattgtgt 205  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||             ||||||||||||||    
T  44748339 aaaatttacatatgaaattactttggtgagctaaccaaaaactttggcaaccaaatggtaatgaatttcttaatttttttttttttaataaacattgtgt 44748438  T
Q  206 ccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaatgtagcctaaataagtttttgttagcaagaatttatttagccta 305  Q
    ||||||| ||| |||||||||||||| | ||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  44748439 ccttattatgattaatcaagtaaaaattctattgatggttataattaactttaaaatgtagcctaaataagtttttgttagcaagaacttatgtagccta 44748538  T
Q  306 cattctagaagtttttaagaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttgattcagttacttgactggg 405  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44748539 cattctagaagtttttatgaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttgattcagttacttgattggg 44748638  T
Q  406 aagaatcaacaagtttttgcactaggaaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcaca 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44748639 aagaatcaacaagtttttgcactaggaaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcaca 44748738  T
Q  506 aaa 508  Q
    |||    
T  44748739 aaa 44748741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 332 - 508
Target Start/End: Complemental strand, 44749314 - 44749139
Alignment:
Q  332 tttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttgattcagttacttgactgggaagaatcaacaagtttttgcactagg 431  Q
    ||||| ||||||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||||||| ||||||||||||    
T  44749314 ttttttttacacctttcagattttattgagaatgttatcaagatgaagaaatt-gattcagttacttggctgagaagaatcaacaagattttgcactagg 44749216  T
Q  432 aaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaa 508  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44749215 aaaatctaaaagaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaa 44749139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 122 - 262
Target Start/End: Complemental strand, 35160752 - 35160613
Alignment:
Q  122 aaattactttggtgagctaaccgaaaactttggcaaccaaatggtaatgaatttcttaannnnnnnnnnnaataaacattgtgtccttattgtgactaat 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||           |||||||||||| |||||||||||||||||    
T  35160752 aaattactttggtgagctaaccgaaaactttggcaaccaaatggtattgaatttcttaatttttttttc-aataaacattgtctccttattgtgactaat 35160654  T
Q  222 caagtaaaaaatttattgacagttataatcaactttaaaat 262  Q
    |||||||||| | |||| |||||||||||||||||||||||    
T  35160653 caagtaaaaattctattcacagttataatcaactttaaaat 35160613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 324 - 426
Target Start/End: Original strand, 44625133 - 44625235
Alignment:
Q  324 gaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttgattcagttacttgactgggaagaatcaacaagttttt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  || ||||||| |||||||||||    
T  44625133 gaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatggagaaatttgattcagttacttggttgagaagaatgaacaagttttt 44625232  T
Q  424 gca 426  Q
    |||    
T  44625233 gca 44625235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 287 - 436
Target Start/End: Original strand, 44615886 - 44616034
Alignment:
Q  287 caagaatttatttagcctacattctagaagtttttaagaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttg 386  Q
    |||||| |||||||||||||||| |||||||||  | || |||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||||    
T  44615886 caagaacttatttagcctacattatagaagtttaaatgatgtgaatttttcttacaccttgcagattttgttgagaa-atattcaagatgaagaaatttg 44615984  T
Q  387 attcagttacttgactgggaagaatcaacaagtttttgcactaggaaaat 436  Q
    ||||||||| ||| | | |||| |||||||||||| |||||||| |||||    
T  44615985 attcagttaattggccgagaaggatcaacaagtttctgcactagaaaaat 44616034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 39379598 - 39379548
Alignment:
Q  336 tcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttg 386  Q
    |||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  39379598 tcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaatttg 39379548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 39131282 - 39131323
Alignment:
Q  333 ttttcttacaccttgcagattttgttgagaatcttatcaaga 374  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  39131282 ttttcttacaccttgcagattttgtcgagaatcttttcaaga 39131323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 2363527 - 2363583
Alignment:
Q  315 agtttttaagaagtgaatttttcttacaccttgcagattttgttgagaatcttatca 371  Q
    |||||| | |||||||| ||||| | |||||||||||||||||| ||||||||||||    
T  2363527 agttttgatgaagtgaaattttcctgcaccttgcagattttgttcagaatcttatca 2363583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 39372205 - 39372257
Alignment:
Q  334 tttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttg 386  Q
    |||||| ||||||||||||||||||||||||||||| | || |||| ||||||    
T  39372205 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttg 39372257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 392
Target Start/End: Complemental strand, 39419885 - 39419835
Alignment:
Q  342 accttgcagattttgttgagaatcttatcaagatgaagaaatttgattcag 392  Q
    |||| ||||||||||||||||||||||| | || |||| ||||||||||||    
T  39419885 acctcgcagattttgttgagaatcttataaggaggaagcaatttgattcag 39419835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 39493131 - 39493082
Alignment:
Q  324 gaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaag 373  Q
    |||||| | |||||||||||||||||| ||||||  ||||||||||||||    
T  39493131 gaagtggaattttcttacaccttgcaggttttgtcaagaatcttatcaag 39493082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 3515 - 3434
Alignment:
Q  277 tttttgttagcaagaatttatttagcctacattctagaagtttttaagaagtgaatttttcttacaccttgcagattttgtt 358  Q
    ||||||||| |||||| ||||||||||| |||||| |||||||| |  ||||||||||||||||||||||||||||||||||    
T  3515 tttttgttaacaagaacttatttagcctgcattcttgaagttttgatcaagtgaatttttcttacaccttgcagattttgtt 3434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 277 - 358
Target Start/End: Complemental strand, 44947536 - 44947455
Alignment:
Q  277 tttttgttagcaagaatttatttagcctacattctagaagtttttaagaagtgaatttttcttacaccttgcagattttgtt 358  Q
    ||||||||| |||||| ||||||||||| |||||| |||||||| |  ||||||||||||||||||||||||||||||||||    
T  44947536 tttttgttaacaagaacttatttagcctgcattcttgaagttttgatcaagtgaatttttcttacaccttgcagattttgtt 44947455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 4929775 - 4929841
Alignment:
Q  192 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 259  Q
    |||||||||| || |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  4929775 aataaacattatgaccttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaa 4929841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 21581249 - 21581317
Alignment:
Q  192 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 261  Q
    ||||||||||||| | | |||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  21581249 aataaacattgtgacttaattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaaaa 21581317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 4929336 - 4929402
Alignment:
Q  192 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 259  Q
    |||||||||| || |||||||||||||| |||| ||||||| ||||||| | ||||||||||||||||    
T  4929336 aataaacattatgaccttattgtgacta-tcaattaaaaaaattattgataattataatcaactttaa 4929402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 650 - 738
Target Start/End: Original strand, 44951700 - 44951788
Alignment:
Q  650 aaaaaaccaacaagcttcatttgtaaaatttccaagtcaaactcaatcacaaagtaatacattacacttccagaagcaaaatcaaagga 738  Q
    |||||| ||||||||||| |||| |||| ||| |  || |||||| |||  || ||| || ||||||||||||||||||||||||||||    
T  44951700 aaaaaaacaacaagcttcctttgaaaaacttctagatcgaactcattcatcaaataacacgttacacttccagaagcaaaatcaaagga 44951788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 16251708 - 16251803
Alignment:
Q  35 tttatttcatttatacaccaaaatgttgtaagctaaaatttggaggattatttaa-gtaccacagtggcaatcgaaaatttacatatgaaattact 129  Q
    |||||||||| || ||| ||||||||| |  ||||||||| | |||| ||||||| |||| | | || ||| ||||||||||||||||||||||||    
T  16251708 tttatttcatatacacatcaaaatgttatttgctaaaattcgaaggaatatttaatgtactagaatgtcaaccgaaaatttacatatgaaattact 16251803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 45343688 - 45343725
Alignment:
Q  277 tttttgttagcaagaatttatttagcctacattctaga 314  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  45343688 tttttgttaacaagaacttatttagcctacattctaga 45343725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 15652745 - 15652813
Alignment:
Q  192 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 261  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  15652745 aataaacattgtgaccttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaaaa 15652813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 192 - 261
Target Start/End: Original strand, 15670577 - 15670645
Alignment:
Q  192 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 261  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  15670577 aataaacattgtgaccttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaaaa 15670645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 15887878 - 15887813
Alignment:
Q  192 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 259  Q
    ||||||||||||| |||||||||||||| |||| |||||| |||||||||| ||||||||||||||||    
T  15887878 aataaacattgtgaccttattgtgacta-tcaattaaaaa-tttattgacaattataatcaactttaa 15887813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 15888302 - 15888252
Alignment:
Q  210 attgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 261  Q
    |||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  15888302 attgtgacta-tcaattaaaaaatttattgacaattataatcaactttaaaa 15888252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 4749184 - 4749236
Alignment:
Q  206 ccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 259  Q
    |||||||||||||  |||| ||||||||||||||| | ||||||||||||||||    
T  4749184 ccttattgtgactg-tcaattaaaaaatttattgataattataatcaactttaa 4749236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 36143886 - 36143818
Alignment:
Q  192 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 261  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  36143886 aataaacattgtgaccttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaaaa 36143818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 10026889 - 10026838
Alignment:
Q  207 cttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 259  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  10026889 cttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaa 10026838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 19017 - 19082
Alignment:
Q  192 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaacttt 257  Q
    ||||||||||| |||||||||||||||||| ||||||||| | |||||||| ||||||||||||||    
T  19017 aataaacattgcgtccttattgtgactaataaagtaaaaattctattgacaattataatcaacttt 19082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 13923780 - 13923714
Alignment:
Q  192 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 259  Q
    |||||||||| || |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  13923780 aataaacattatgaccttattgtgacta-tcaattaaaaaatttattgacaattataatcaactttaa 13923714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 14275794 - 14275914
Alignment:
Q  10 ttatactgaaaggggcatttattgatttatttcatttatacaccaaaatgttgtaagctaaaatttggaggattatttaa-gtaccacagtggcaatcga 108  Q
    ||||| ||||||| ||||||| || ||||||| || || ||| ||||||||| |  ||||||||| |||||| ||||| | |||||| | || ||| |||    
T  14275794 ttatattgaaaggtgcatttaatgttttattttatatacacatcaaaatgttatttgctaaaattcggaggagtatttcatgtaccagaatgacaaccga 14275893  T
Q  109 aaatttacatatgaaattact 129  Q
    |||||||||||||||||||||    
T  14275894 aaatttacatatgaaattact 14275914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 13924200 - 13924134
Alignment:
Q  192 aataaacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaa 259  Q
    |||||||||| || |||||||||||||| |||| ||||||||||||||| | ||||||||||||||||    
T  13924200 aataaacattatgaccttattgtgacta-tcaattaaaaaatttattgataattataatcaactttaa 13924134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 277 - 390
Target Start/End: Original strand, 17061170 - 17061284
Alignment:
Q  277 tttttgttagcaagaatttatttagcctacattctag-aagtttttaagaagtgaatttttcttacaccttgcagattttgttgagaatcttatcaagat 375  Q
    ||||||||| || ||| ||||||| ||| || ||||| || |||| | |||||||| |||| |||  | ||||||||||||||||||||||||||||||     
T  17061170 tttttgttaacaggaacttatttaacctccactctagtaaattttgatgaagtgaaattttgttatccattgcagattttgttgagaatcttatcaagag 17061269  T
Q  376 gaagaaatttgattc 390  Q
    |||| ||||||||||    
T  17061270 gaaggaatttgattc 17061284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 18269144 - 18269206
Alignment:
Q  196 aacattgtgtccttattgtgactaatcaagtaaaaaatttattgacagttataatcaactttaaaa 261  Q
    ||||||||| ||||||||||||| ||||| ||||||||||||||||| |  |||||||||||||||    
T  18269144 aacattgtgaccttattgtgact-atcaaataaaaaatttattgacaat--taatcaactttaaaa 18269206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University