View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_10 (Length: 396)
Name: NF14623_low_10
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 48 - 396
Target Start/End: Complemental strand, 35626037 - 35625689
Alignment:
| Q |
48 |
caaaatcttatcatcatagatttatcttatctttagttcttcttatattcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggttt |
147 |
Q |
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| T |
35626037 |
caaaatcttatcatcatagatttatcttatctttagttcttcttatattcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggttt |
35625938 |
T |
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| Q |
148 |
aattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcag |
247 |
Q |
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| T |
35625937 |
aattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcag |
35625838 |
T |
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| Q |
248 |
ttcagaactcatgtactacccatgctaatgatcccaagaacaaacatatgtttgtatagcattccagccaagagaatgtatgcatttaaatttccactta |
347 |
Q |
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| T |
35625837 |
ttcagaactcatgtactacccatgctaatgatcccaagaacaaacatatgtttgtatagcattccagccaagagaatgtatgcatttaaatttccaatta |
35625738 |
T |
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| Q |
348 |
ttaactacaaaattacttgttgctgaaatagtcatggatgcctttcatt |
396 |
Q |
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| T |
35625737 |
ttaactacaaaattacttgttgcggaaatagtcatggatggcttgcatt |
35625689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 35626269 - 35626221
Alignment:
| Q |
9 |
aatataagtagggtttctagggttgaataagccataacacaaaatctta |
57 |
Q |
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| T |
35626269 |
aatataagtagggtttctagggttgaataagccataacacaaaatctta |
35626221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 35629499 - 35629455
Alignment:
| Q |
295 |
atgtttgtatagcattccagccaagagaatgtatgcatttaaatt |
339 |
Q |
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| T |
35629499 |
atgtttgtatagcatttcagcgaagaaaatgtatccatttaaatt |
35629455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 114 - 243
Target Start/End: Original strand, 4235404 - 4235533
Alignment:
| Q |
114 |
attgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcg |
213 |
Q |
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| T |
4235404 |
attgggcaaatttagaagcacttcctcttagtttgatacttgacaagttagaagaacacatatatcatgtttggtttggtgctgtgtgcaagagttggcg |
4235503 |
T |
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| Q |
214 |
atcaattgcaaagtttaaccatcaaaatca |
243 |
Q |
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| T |
4235504 |
atcaattgcaaagtttaaccatcaaaatca |
4235533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 114 - 279
Target Start/End: Original strand, 49144997 - 49145162
Alignment:
| Q |
114 |
attgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcg |
213 |
Q |
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| T |
49144997 |
attgggcaaatttagaagcccttgctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcg |
49145096 |
T |
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| Q |
214 |
atcaattgcaaagtttaaccatcaaaatcagcagttcagaactcatgtactacccatgctaatgat |
279 |
Q |
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| T |
49145097 |
atcaattgcaaagtttagccatcaaaatcatcaattcaagaccaatgcactacccatgctaatgat |
49145162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 49149524 - 49149668
Alignment:
| Q |
94 |
attcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggt |
193 |
Q |
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|||||||| |||||| |||||||| |||||||| |||| || | || ||||| ||||||||| ||||||||||| ||||||||||||||||| ||| |
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| T |
49149524 |
attcaacacaatggagagagattgggtaaatttaggagcaattcctcttggtttggttcttgacatgttagaagaacacatagatcatgtttggtttggt |
49149623 |
T |
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| Q |
194 |
gccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaa |
238 |
Q |
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| T |
49149624 |
gctgtgtgcaagagttggcgatcaattgcaaagcttaaccatcaa |
49149668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 28614673 - 28614756
Alignment:
| Q |
157 |
caagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaa |
240 |
Q |
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| T |
28614673 |
caagttagaagaacacatagatcatgttaggttcagtgtcgtgtgcaagacttggcgatcagttgcaaagcttaaccatcaaaa |
28614756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 28621265 - 28621396
Alignment:
| Q |
150 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagtt |
249 |
Q |
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|||||||||| || ||||||| || ||||||||| |||| |||| ||||||||| || ||||| ||| |||||||||| |||||||||||||| || || |
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| T |
28621265 |
ttcttgacaaattggaagaacacatcgatcatgttaggtttggtgtcgtgtgcaaaaattggcgttcagttgcaaagttgaaccatcaaaatcatcaatt |
28621364 |
T |
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| Q |
250 |
cagaactcatgtactacccatgctaatgatcc |
281 |
Q |
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| T |
28621365 |
tagcattaatataccacccatgctcatgatcc |
28621396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 28613035 - 28612946
Alignment:
| Q |
150 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaa |
239 |
Q |
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| T |
28613035 |
ttcttgacaagttggaagaacacatagatcatgttaggtttgctgtcgtgtgcaagacttggctatcagttgcaaagcttaaccatcaaa |
28612946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 29269810 - 29269941
Alignment:
| Q |
150 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaaccatcaaaatcagcagtt |
249 |
Q |
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|||||||| |||| ||||||| |||||||||||| |||| |||| |||||||||| || | ||||||||||||| |||||||| ||||||| || || |
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| T |
29269810 |
ttcttgacgagttggaagaacacatagatcatgttaggtttggtgtggtgtgcaagagttgcctatcaattgcaaagcttaaccataaaaatcatcaatt |
29269909 |
T |
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| Q |
250 |
cagaactcatgtactacccatgctaatgatcc |
281 |
Q |
| |
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|| | | |||||| ||| ||| ||||||||| |
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| T |
29269910 |
taggattgatgtaccacctatgttaatgatcc |
29269941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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