View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_12 (Length: 358)
Name: NF14623_low_12
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 117 - 334
Target Start/End: Original strand, 53174103 - 53174315
Alignment:
| Q |
117 |
atcaaaagtggggctagtctactctactctactctacttacttacccagctatgtaaactttggtgagacacatccacaggtttcctaccagaaatgact |
216 |
Q |
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| T |
53174103 |
atcaaaagtggggctagtcta-----ctctactctacttacttacccagctatgtaaactttggtgagacacatccacaggtttcctaccagaaatgact |
53174197 |
T |
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| Q |
217 |
tctagcaagaacacaccaaaagcaaacacatctgttttctcatccacaactccatgcaagtagtattctggtgccaaatgtctacaaaacataaaccatt |
316 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53174198 |
tctagcaagaacacaccaaaagcaaatacatctgttttctcatccacaactccatgcaagtagtattctggtgccaaatgtctacaaaacataaaccatt |
53174297 |
T |
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| Q |
317 |
ccatttttataaagaaat |
334 |
Q |
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|||||||||||||||||| |
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| T |
53174298 |
ccatttttataaagaaat |
53174315 |
T |
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