View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14623_low_14 (Length: 354)

Name: NF14623_low_14
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14623_low_14
NF14623_low_14
[»] chr1 (6 HSPs)
chr1 (185-348)||(8064765-8064930)
chr1 (27-133)||(8064981-8065086)
chr1 (38-114)||(9539625-9539701)
chr1 (35-90)||(10781179-10781234)
chr1 (1-34)||(8067007-8067040)
chr1 (35-111)||(1017021-1017097)
[»] chr3 (10 HSPs)
chr3 (35-132)||(26285830-26285925)
chr3 (35-130)||(24309880-24309973)
chr3 (27-132)||(36475469-36475573)
chr3 (35-114)||(52308860-52308939)
chr3 (35-112)||(38572996-38573073)
chr3 (35-114)||(23778278-23778357)
chr3 (35-130)||(7856503-7856596)
chr3 (25-88)||(36478044-36478106)
chr3 (35-111)||(25070727-25070803)
chr3 (35-111)||(36617793-36617869)
[»] chr8 (8 HSPs)
chr8 (25-130)||(44873289-44873391)
chr8 (35-132)||(7681372-7681467)
chr8 (28-132)||(24556906-24557008)
chr8 (42-114)||(11993687-11993759)
chr8 (35-132)||(10381423-10381518)
chr8 (35-130)||(29866166-29866261)
chr8 (57-131)||(34696983-34697055)
chr8 (35-111)||(45486211-45486287)
[»] chr4 (6 HSPs)
chr4 (37-132)||(2158632-2158725)
chr4 (35-91)||(33518114-33518170)
chr4 (40-130)||(2813993-2814081)
chr4 (58-130)||(4377240-4377310)
chr4 (58-130)||(36247832-36247902)
chr4 (35-90)||(36247913-36247967)
[»] scaffold0002 (1 HSPs)
scaffold0002 (35-114)||(461336-461415)
[»] chr2 (6 HSPs)
chr2 (35-131)||(34190029-34190123)
chr2 (29-132)||(7700341-7700442)
chr2 (35-132)||(32032976-32033071)
chr2 (40-93)||(3357103-3357156)
chr2 (35-111)||(18703667-18703743)
chr2 (35-111)||(34878648-34878724)
[»] chr7 (12 HSPs)
chr7 (35-111)||(24658444-24658519)
chr7 (35-111)||(1691668-1691744)
chr7 (35-93)||(30074637-30074695)
chr7 (35-93)||(33941645-33941703)
chr7 (42-131)||(38300394-38300481)
chr7 (37-132)||(2945406-2945501)
chr7 (36-114)||(46090205-46090283)
chr7 (35-132)||(25232948-25233044)
chr7 (44-93)||(32221853-32221902)
chr7 (36-111)||(39785519-39785594)
chr7 (35-111)||(39781014-39781090)
chr7 (35-111)||(43265950-43266026)
[»] chr6 (4 HSPs)
chr6 (38-114)||(6689223-6689299)
chr6 (40-132)||(14607776-14607866)
chr6 (44-112)||(21883277-21883345)
chr6 (41-132)||(16461644-16461733)
[»] chr5 (9 HSPs)
chr5 (35-131)||(7607270-7607364)
chr5 (35-111)||(36744958-36745034)
chr5 (40-132)||(34751091-34751181)
chr5 (35-111)||(5569034-5569110)
chr5 (61-132)||(26459694-26459763)
chr5 (48-111)||(33824755-33824818)
chr5 (25-132)||(43144563-43144669)
chr5 (35-110)||(5069867-5069942)
chr5 (25-86)||(29670020-29670080)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 185 - 348
Target Start/End: Complemental strand, 8064930 - 8064765
Alignment:
Q  185 cccacatatatctaaagtctgaatctgcccctgcggataagggagtcgtttctgcatcatagtgcgtaggagactcggatccttctagt--caaaataat 282  Q
    ||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||||    
T  8064930 cccacatatatctaaagtctggatctacccctgcggataagggagccgtttctgcttcatagtgcgtaggagactcggatccttctagtcacaaaataat 8064831  T
Q  283 ataagaatataattttaaacataatcgttaatggagaaagttaccataacatatttgaacttaaga 348  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||    
T  8064830 ataagaacataattttaaccataatcgtcaatggagaaagttaccataacatatttaaacttaaga 8064765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 8065086 - 8064981
Alignment:
Q  27 aaaaagag-tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaa 125  Q
    |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||  || ||||||    
T  8065086 aaaaagagatgttcttttaacaattagcaatgatgtcattttcgctcattctcaaccaatggataggagacgattttcattgtaatgta--ttgtatcaa 8064989  T
Q  126 acaatgta 133  Q
    ||||||||    
T  8064988 acaatgta 8064981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 9539625 - 9539701
Alignment:
Q  38 tcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgta 114  Q
    |||||||||||| |||||| || | |||||  |||||| |||||||||||||| || | ||||||||||||||||||    
T  9539625 tcttttaacaataagcaatgatattattttagctcattttcaacaaatggataagagatgattttcattgtaatgta 9539701  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 10781179 - 10781234
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggata 90  Q
    |||||||||||||||||||||  || ||||||| ||||||| ||||||||||||||    
T  10781179 tgttcttttaacaattagcaacgatttcattttaactcattttcaacaaatggata 10781234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8067040 - 8067007
Alignment:
Q  1 tggatggatcaaaattattttgcaagaaaaagag 34  Q
    ||||||||||||||||||||||||||||||||||    
T  8067040 tggatggatcaaaattattttgcaagaaaaagag 8067007  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 1017021 - 1017097
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    ||||||||| |||||||||| | |||| ||| |  |||||||||||||||||||| | | | |||||| ||||||||    
T  1017021 tgttcttttcacaattagcactgatgttattctagctcattctcaacaaatggatggcagacgatttttattgtaat 1017097  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 26285830 - 26285925
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    |||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||| | ||||||||||||||||||  || |||||||||||||    
T  26285830 tgttcttttaacaattagcaatgatgtccttttaactcattttcaacaaatggataggaaacgattttcattgtaatgta--ttgtatcaaacaatgt 26285925  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 24309973 - 24309880
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaat 130  Q
    ||||||||||||||||| |||| |||| ||||| ||| ||| ||||||||||||||||| | ||||||||||||||||||  || |||||||||||    
T  24309973 tgttcttttaacaattaacaatgatgtgattttgacttattttcaacaaatggataggagacgattttcattgtaatgta--ttgtatcaaacaat 24309880  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 132
Target Start/End: Complemental strand, 36475573 - 36475469
Alignment:
Q  27 aaaaagag-tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaa 125  Q
    |||||||| |||||||||||||||||||||| ||||||||||| |||||| | |||||||| || ||| | ||||||||||||| ||||  || ||||||    
T  36475573 aaaaagagatgttcttttaacaattagcaatgatgtcattttcgctcatttttaacaaatgaatgggagacgattttcattgtagtgta--ttgtatcaa 36475476  T
Q  126 acaatgt 132  Q
    |||||||    
T  36475475 acaatgt 36475469  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 52308860 - 52308939
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgta 114  Q
    |||||| |||||||||| |||| ||||||||||  |||||| ||||||||||||||||| | ||||||||||||||||||    
T  52308860 tgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggataggagatgattttcattgtaatgta 52308939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 38573073 - 38572996
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatg 112  Q
    |||||| |||||||||||||||  |||||||||  |||||| ||||||||||||||||| | ||||||||||||||||    
T  38573073 tgttctattaacaattagcaatgctgtcattttagctcattttcaacaaatggataggagacgattttcattgtaatg 38572996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 23778357 - 23778278
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgta 114  Q
    |||||||||||||||||||||| ||||||||||  |||||| |||||||||||||| || |  ||||| |||||||||||    
T  23778357 tgttcttttaacaattagcaatgatgtcattttagctcattttcaacaaatggataagagaccatttttattgtaatgta 23778278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 7856596 - 7856503
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaat 130  Q
    ||||||||||||||||| |||| | ||||||||  |||||| | ||||||||||||||| | |||||| ||| |||||||  || |||||||||||    
T  7856596 tgttcttttaacaattaacaatgacgtcattttagctcatttttaacaaatggataggagacgatttttattataatgta--ttgtatcaaacaat 7856503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 36478044 - 36478106
Alignment:
Q  25 agaaaaagagtgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatgga 88  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||  |||||| |||| |||||||    
T  36478044 agaaaaaga-tgttcttttaacaattagtaatgatgtcattttagctcattttcaagaaatgga 36478106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 25070727 - 25070803
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    ||||||||| |||||||||| | |||| ||| |  |||||| ||||||||||||| | | | |||||||||||||||    
T  25070727 tgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 25070803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 36617793 - 36617869
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    ||||||||| |||||||||| | |||| ||| |  |||||| ||||||||||||| | | | |||||||||||||||    
T  36617793 tgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 36617869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 44873391 - 44873289
Alignment:
Q  25 agaaaaagagtgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatca 124  Q
    ||||||||| |||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||| | | ||||||||||||||||||  || |||||    
T  44873391 agaaaaaga-tgttcttttaacaattagcaatcatgttattttaactcattttcaacaaatggatagaagacgattttcattgtaatgta--ttgtatca 44873295  T
Q  125 aacaat 130  Q
    ||||||    
T  44873294 aacaat 44873289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 35 - 132
Target Start/End: Original strand, 7681372 - 7681467
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    |||||||||||||||||||||| ||||||||||    |||| ||||||||||||||||| | ||||||||||||||| ||  || |||||||||||||    
T  7681372 tgttcttttaacaattagcaatgatgtcattttagaacattttcaacaaatggataggaaacgattttcattgtaatata--ttgtatcaaacaatgt 7681467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 24556906 - 24557008
Alignment:
Q  28 aaaagagtgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaac 127  Q
    |||| ||| |||||||||||||||||||||||| || |||   ||||| ||||||||||||||| |   ||||||||||||||||||  || ||||||||    
T  24556906 aaaaaagttttcttttaacaattagcaataatgacaatttacttcattttcaacaaatggatagaaatcgattttcattgtaatgta--ttgtatcaaac 24557003  T
Q  128 aatgt 132  Q
    |||||    
T  24557004 aatgt 24557008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 11993687 - 11993759
Alignment:
Q  42 ttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgta 114  Q
    |||||||||| |||| ||||||||||  |||||| |||||||||| |||||| | || |||||||||||||||    
T  11993687 ttaacaattaacaatgatgtcattttagctcattttcaacaaatgtataggagatgactttcattgtaatgta 11993759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 10381518 - 10381423
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    |||| |||||||||||| |||| ||||||||||   ||||| ||||||||| |||| || |  ||||| |||||||||||  ||||||||||||||||    
T  10381518 tgttattttaacaattaacaatgatgtcattttagttcattttcaacaaatagataagagacaattttgattgtaatgta--ttatatcaaacaatgt 10381423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 29866261 - 29866166
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggatagg--attttcattgtaatgtacgttatatcaaacaat 130  Q
    ||||||||||| |||||  ||| ||||||||||  |||||| ||||||||||||| ||| | |  |||||||||||||||||  || |||||||||||    
T  29866261 tgttcttttaaaaattaataatgatgtcattttagctcattttcaacaaatggatcggagatgaaattttcattgtaatgta--ttgtatcaaacaat 29866166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 34696983 - 34697055
Alignment:
Q  57 aatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatg 131  Q
    |||||||||||  |||||| |||||||||||||| || | ||||||||||||||| ||  || ||||||||||||    
T  34696983 aatgtcattttatctcattttcaacaaatggatatgagacgattttcattgtaatata--ttgtatcaaacaatg 34697055  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 45486211 - 45486287
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    ||||||||| |||||||||| | |||| ||| |  |||||| ||||||||||||| | | | |||||||||||||||    
T  45486211 tgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 45486287  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 2158725 - 2158632
Alignment:
Q  37 ttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    |||||||||||||||||||| || | |||||  |||||| ||||||||||||||||| | ||||||||||||||||||  || |||||||||||||    
T  2158725 ttcttttaacaattagcaatgatattattttagctcattttcaacaaatggataggagacgattttcattgtaatgta--ttgtatcaaacaatgt 2158632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 33518170 - 33518114
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggatag 91  Q
    |||||||||||||||||||||| ||||||||||  |||||| |||||| ||||||||    
T  33518170 tgttcttttaacaattagcaatgatgtcattttagctcattttcaacagatggatag 33518114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 2814081 - 2813993
Alignment:
Q  40 ttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaat 130  Q
    |||||||||| |||||| |||| |||||  |||||| |||||||||||||| || | || |||||||||||||||  || |||||||||||    
T  2814081 ttttaacaataagcaatgatgttattttagctcattttcaacaaatggatatgagacgactttcattgtaatgta--ttgtatcaaacaat 2813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 4377310 - 4377240
Alignment:
Q  58 atgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaat 130  Q
    |||||||||| ||||||| ||||||||||||||  | | ||||||||||||||||||  || |||||||||||    
T  4377310 atgtcattttaactcattttcaacaaatggatataagacgattttcattgtaatgta--ttgtatcaaacaat 4377240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 36247902 - 36247832
Alignment:
Q  58 atgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaat 130  Q
    ||||||||||  |||||| |||||||||||||| || | ||||||||||||||||||  || |||||||||||    
T  36247902 atgtcattttagctcattttcaacaaatggatatgagacgattttcattgtaatgta--ttgtatcaaacaat 36247832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 36247967 - 36247913
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggata 90  Q
    ||||||||||||||||| |||| ||||||||||  |||||| ||||||||||||||    
T  36247967 tgttcttttaacaattaacaatgatgtcattttagctcatt-tcaacaaatggata 36247913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 114
Target Start/End: Original strand, 461336 - 461415
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgta 114  Q
    |||| ||||||||||||||||| ||||||||||  |||||| ||||||||| ||||||| | ||||||||||||||||||    
T  461336 tgttattttaacaattagcaatgatgtcattttagctcattttcaacaaatagataggagacgattttcattgtaatgta 461415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 34190123 - 34190029
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatg 131  Q
    |||||| ||||||||||||||| || |||||||   ||||| ||||||||||||||||| | ||||||||||||||||||  || ||||||||||||    
T  34190123 tgttctattaacaattagcaatgatatcattttagttcattttcaacaaatggataggagacgattttcattgtaatgta--ttgtatcaaacaatg 34190029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 7700442 - 7700341
Alignment:
Q  29 aaagagtgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaaca 128  Q
    ||||| |||||||||||||||||||||| ||||||||||  |||||| |||||| ||| ||| || | ||||||||||| ||||||  || |||||||||    
T  7700442 aaagaatgttcttttaacaattagcaatgatgtcattttagctcattttcaacatatgaatatgagatgattttcattgcaatgta--ttgtatcaaaca 7700345  T
Q  129 atgt 132  Q
    ||||    
T  7700344 atgt 7700341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 32033071 - 32032976
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    |||||||||||||||||| | | |||||||||| ||||||| | ||||||||||||||  | |||||||||| |||||||  || |||||||||||||    
T  32033071 tgttcttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttcattctaatgta--ttgtatcaaacaatgt 32032976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 3357103 - 3357156
Alignment:
Q  40 ttttaacaattagcaataatgtcattttcactcattctcaacaaatggatagga 93  Q
    ||||||||||||||||| ||||||||||  |||||| |||||||||||||||||    
T  3357103 ttttaacaattagcaatgatgtcattttatctcattttcaacaaatggatagga 3357156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 18703667 - 18703743
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    ||||||||||||||||||||||  | | |||||  |||||| | ||||||||||||||| |  ||||||||||||||    
T  18703667 tgttcttttaacaattagcaatgtttttatttttgctcatttttaacaaatggataggagacaattttcattgtaat 18703743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 34878648 - 34878724
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    ||||||||||||||||| |||| | ||| |||| ||||||| |||||||||| ||| || || ||||  ||||||||    
T  34878648 tgttcttttaacaattaacaatgacgtctttttaactcattttcaacaaatgaatatgaaagaatttatattgtaat 34878724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 24658519 - 24658444
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    |||||| |||||| |||||||| |||||||||| ||||||| ||||||||||||||||| | |||||||||||||||    
T  24658519 tgttctattaaca-ttagcaatgatgtcattttaactcattttcaacaaatggataggaaacgattttcattgtaat 24658444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 1691744 - 1691668
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    |||||| |||||||||| |||| || ||||||| ||||||| ||||||||||||||||| | ||||| |||||||||    
T  1691744 tgttctattaacaattaacaatgatatcattttaactcattttcaacaaatggataggagatgatttacattgtaat 1691668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 30074637 - 30074695
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggatagga 93  Q
    ||||||||||||||||| |||| |||||||||| ||| ||| |||||||||||||||||    
T  30074637 tgttcttttaacaattaacaatgatgtcattttaacttattttcaacaaatggatagga 30074695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 33941645 - 33941703
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggatagga 93  Q
    |||||||||||||||||||||| |||| ||||| ||||||| ||||||||| |||||||    
T  33941645 tgttcttttaacaattagcaatgatgttattttaactcattttcaacaaattgatagga 33941703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 38300394 - 38300481
Alignment:
Q  42 ttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatg 131  Q
    |||||||||| ||||  |||||||||  |||||| ||||||||||||||||| | ||||||||||||||  ||| || ||||||||||||    
T  38300394 ttaacaattatcaatgctgtcattttagctcattttcaacaaatggataggagacgattttcattgtaa--tacattgtatcaaacaatg 38300481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 2945406 - 2945501
Alignment:
Q  37 ttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggata--ggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    |||||||||||||||||||| ||||||||||   ||||| ||||||||| ||||||| |   |||||| |||||||||||  || |||||||||||||    
T  2945406 ttcttttaacaattagcaatgatgtcattttaggtcattttcaacaaatagataggagacgagatttttattgtaatgta--ttgtatcaaacaatgt 2945501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 46090205 - 46090283
Alignment:
Q  36 gttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgta 114  Q
    ||||||||||||||||  ||  |||||||||| | ||||| |||||||||| ||| || | ||||||||||||||||||    
T  46090205 gttcttttaacaattactaaggatgtcattttaattcattttcaacaaatgaatatgagacgattttcattgtaatgta 46090283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 25233044 - 25232948
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    ||||||||||| ||||||||    ||| ||||| ||||||| ||||||||||||||||| |  |||||||||||||| ||  || |||||||||||||    
T  25233044 tgttcttttaaaaattagcagcgctgttattttaactcattttcaacaaatggataggagacaattttcattgtaat-tatattgtatcaaacaatgt 25232948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 32221853 - 32221902
Alignment:
Q  44 aacaattagcaataatgtcattttcactcattctcaacaaatggatagga 93  Q
    |||| |||||||| |||||||||| ||||||| |||||||||||||||||    
T  32221853 aacatttagcaatgatgtcattttaactcattttcaacaaatggatagga 32221902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 39785594 - 39785519
Alignment:
Q  36 gttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    |||||||||||||||| ||||  ||| |||||  |||||| | ||||||||||||| | | |||||||||||||||    
T  39785594 gttcttttaacaattatcaatgttgttattttagctcatttttaacaaatggatagtagacgattttcattgtaat 39785519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 39781014 - 39781090
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    ||||||||| |||||||||| | |||| ||| |  |||||| ||||||||||||| | | | |||||||||||||||    
T  39781014 tgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttcattgtaat 39781090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 43265950 - 43266026
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    ||||||||| |||||||||| | |||| ||| |  |||||| ||||||||||||| | | | |||||||||||||||    
T  43265950 tgttcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagatgattttcattgtaat 43266026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 6689299 - 6689223
Alignment:
Q  38 tcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgta 114  Q
    ||||||||||||||||||| ||||||||||  |||| | |||| |||||||||||| | ||||||||||||||||||    
T  6689299 tcttttaacaattagcaatgatgtcattttagctcaatttcaataaatggataggagacgattttcattgtaatgta 6689223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 14607776 - 14607866
Alignment:
Q  40 ttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    |||||||||| || ||| |||| |||||  |||||| ||||||||||||||||| |  |||||||||||||||||  || |||||||||||||    
T  14607776 ttttaacaataagaaatgatgttattttagctcattttcaacaaatggataggagaaaattttcattgtaatgta--ttgtatcaaacaatgt 14607866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 21883345 - 21883277
Alignment:
Q  44 aacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatg 112  Q
    |||||||||||||  |||||||||  |||||| ||||||||||||||| | | ||||||||||||||||    
T  21883345 aacaattagcaatgctgtcattttttctcattttcaacaaatggatagaagacgattttcattgtaatg 21883277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 16461644 - 16461733
Alignment:
Q  41 tttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    ||||||||||| |||| |||||||||   |||||| |||||||||| |||||| |  |||||||||||||| ||  || |||||||||||||    
T  16461644 tttaacaattaacaatgatgtcatttaagctcattttcaacaaatgaataggagacaattttcattgtaatata--ttgtatcaaacaatgt 16461733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 7607270 - 7607364
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatg 131  Q
    |||||| |||||||||| |||| ||||||||||  |||||| ||||||||||||||| | | |||||| |||||||||||  || ||||||||||||    
T  7607270 tgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggatagaagacgatttttattgtaatgta--ttgtatcaaacaatg 7607364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 36745034 - 36744958
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    |||||||||||||||||||||| ||||||||||  |||||| ||||||||||||||  | | |||||| ||||||||    
T  36745034 tgttcttttaacaattagcaatgatgtcattttagctcattttcaacaaatggatataagacgattttaattgtaat 36744958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 34751091 - 34751181
Alignment:
Q  40 ttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    ||||||||||||||||| ||||||||||  |||||| ||||||||| || | || | |||||||||| |||||||  || |||||||||||||    
T  34751091 ttttaacaattagcaatgatgtcattttagctcattttcaacaaatagacacgagatgattttcattttaatgta--ttgtatcaaacaatgt 34751181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 5569110 - 5569034
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    ||||||||||| ||||||||||  ||| ||||| ||||||| |||||||||||||| || |  ||||||||||||||    
T  5569110 tgttcttttaaaaattagcaatgttgttattttaactcattttcaacaaatggatacgagacaattttcattgtaat 5569034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 26459763 - 26459694
Alignment:
Q  61 tcattttcactcattctcaacaaatggataggataggattttcattgtaatgtacgttatatcaaacaatgt 132  Q
    |||||||  |||||| ||||||||||||||||| | ||||||||||||||||||  || |||||||||||||    
T  26459763 tcattttagctcattttcaacaaatggataggacacgattttcattgtaatgta--ttgtatcaaacaatgt 26459694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 33824755 - 33824818
Alignment:
Q  48 attagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaat 111  Q
    ||||||||| |||| ||||| ||||||| |||||||||| |||||| | |||||||||||||||    
T  33824755 attagcaatgatgttattttaactcattttcaacaaatgaataggagacgattttcattgtaat 33824818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 43144669 - 43144563
Alignment:
Q  25 agaaaaagagtgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggatagg--attttcattgtaatgtacgttatat 122  Q
    ||||||||| ||||||||||||||||| |||  |||||| |||  |||||| ||||||||||||| ||| | |  |||||||||||||||||  || |||    
T  43144669 agaaaaaga-tgttcttttaacaattaacaaagatgtcactttagctcattttcaacaaatggattggagaagaaattttcattgtaatgta--ttgtat 43144573  T
Q  123 caaacaatgt 132  Q
    ||||||||||    
T  43144572 caaacaatgt 43144563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 5069942 - 5069867
Alignment:
Q  35 tgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatggataggataggattttcattgtaa 110  Q
    |||| |||||||||||| |||| || ||||||| ||||||| ||||||||| || | || | ||||||||||||||    
T  5069942 tgttattttaacaattaacaatgatatcattttaactcattttcaacaaatagacatgagatgattttcattgtaa 5069867  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 29670080 - 29670020
Alignment:
Q  25 agaaaaagagtgttcttttaacaattagcaataatgtcattttcactcattctcaacaaatg 86  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||  || ||| ||||||||||    
T  29670080 agaaaaaga-tgttcttttaacaattatcaataatgttattttagcttattttcaacaaatg 29670020  T

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