View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_19 (Length: 300)
Name: NF14623_low_19
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 281
Target Start/End: Original strand, 37588799 - 37589076
Alignment:
| Q |
4 |
cataggagctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttccggcctgtcctttaat |
103 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588799 |
catagaagctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttccggcctgtcctttaat |
37588898 |
T |
|
| Q |
104 |
attggcaggaaatatctgaaacataaggtaatatttgagcaaaattggtgccatcgttttaccaagtagaatcatactaattctaataaacctgataaag |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588899 |
attggcaggaaatatctgaaacataaggtaatatttgagcaaaattggtgccatcgttttaccaagtagaatcatactaattctaataaacctgataaag |
37588998 |
T |
|
| Q |
204 |
catacacattttataacaggcatatatagctcctcccgaaatctaagtaaaagataagcaaagaagggattggataag |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588999 |
catacacattttataacaggcatatatagctcctcccgaaatctaagtaaaagataagcaaagaagggattggataag |
37589076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 37582504 - 37582647
Alignment:
| Q |
4 |
cataggagctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttccggcctgtcctttaat |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
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| T |
37582504 |
cataggagctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatgcttccggcatgccctttaat |
37582603 |
T |
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| Q |
104 |
attggcaggaaatatctgaaacataaggtaatatttgagcaaaa |
147 |
Q |
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| T |
37582604 |
attggcaggaaatatctgaaacaaaaggtaatatttgagcaaaa |
37582647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 37465360 - 37465230
Alignment:
| Q |
4 |
cataggagctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttccggcctgtcctttaat |
103 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| |
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| T |
37465360 |
cataggagctccaactcatgagaaagttgaaagtataggagcataaccatgcaccaaaccagttcactaatgttgctatgcttcctgcctgccctttaat |
37465261 |
T |
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| Q |
104 |
attggcaggaaatatctgaaacataaggtaa |
134 |
Q |
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|||| | ||||||||||| |||||||||||| |
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| T |
37465260 |
attgactggaaatatctgcaacataaggtaa |
37465230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 6776842 - 6776973
Alignment:
| Q |
4 |
cataggagctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttccggcctgtcctttaat |
103 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||| ||||| |||||||| |
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| T |
6776842 |
cataggagctccaactcatgagaaagttgaaagtataggagcataaccatgcaccaaaccagttcactattgttgctatgcttcctgcctgccctttaat |
6776941 |
T |
|
| Q |
104 |
attggcaggaaatatctgaaacataaggtaat |
135 |
Q |
| |
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|||| | ||||||||||| ||||||||||||| |
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| T |
6776942 |
attgactggaaatatctgcaacataaggtaat |
6776973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 49022183 - 49022071
Alignment:
| Q |
34 |
aagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttccggcctgtcctttaatattggcaggaaatatctgaaacataaggta |
133 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||| || ||||||||||||| ||||||||||| |
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| T |
49022183 |
aagtataggaacataaccatgcaccaaaccagttcactaatgttgctatgcttcatgcctgccctttaatactgacaggaaatatctgcaacataaggta |
49022084 |
T |
|
| Q |
134 |
atatttgagcaaa |
146 |
Q |
| |
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|| ||| |||||| |
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|
| T |
49022083 |
attttttagcaaa |
49022071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 4803678 - 4803600
Alignment:
| Q |
10 |
agctccaacccatgagaaagttgaaagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttcc |
88 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||| |
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| T |
4803678 |
agctccaactcatgagaaagttgaaagtgtaggagcattatcatgcaccaaaccagttcactaatgttgctatgcttcc |
4803600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 37582698 - 37582743
Alignment:
| Q |
227 |
atatagctcctcccgaaatctaagtaaaagataagcaaagaaggga |
272 |
Q |
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|||||||||||||||||||| | | |||||| |||||||||||||| |
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| T |
37582698 |
atatagctcctcccgaaatcaaggaaaaagaaaagcaaagaaggga |
37582743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 37426059 - 37426171
Alignment:
| Q |
34 |
aagtataggagcatagccatgcaccaaaccagttcactaatgtggctatacttccggcctgtcctttaatattggcaggaaatatctgaaacataaggta |
133 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||| ||||||||||||| ||||||||||| |
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| T |
37426059 |
aagtataggaacataaccatgcaccaaaccagttcactaatgttgctatgcttcatgcctgccctttaatattgacaggaaatatctgcaacataaggta |
37426158 |
T |
|
| Q |
134 |
atatttgagcaaa |
146 |
Q |
| |
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|| ||| |||||| |
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|
| T |
37426159 |
attttttagcaaa |
37426171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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