View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_2 (Length: 737)
Name: NF14623_low_2
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 662; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 18 - 725
Target Start/End: Complemental strand, 46764069 - 46763362
Alignment:
| Q |
18 |
gtttaaagtctttctgataagagccaaccattttttggcagggccattgtcctctgcccctaggatattaccggcattcaacggaactatctcttgaaat |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46764069 |
gtttaaagtctttctgataagagccagccattttttggcagggccattgtcctctgcccctaggatattaccggcattcaacggaactatctcttgaaat |
46763970 |
T |
|
| Q |
118 |
ctgcaagagaaaggtaaagattcagaatagaaaaatatgtcattcgataaagcagttaagggttaaatatattttagtcgctatcaaatttacannnnnn |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763969 |
ctgcaagagaaaggtaaagattcagaatagaaaaatatgtcattcgataaagcagttaagggttaaatatattttagtcgctatcaaatttacatttttt |
46763870 |
T |
|
| Q |
218 |
nnnngttttagtccctgtaacaacttttcagtcctacaaatcacaaaaccttatacttgtagtccctccttagagactaaaatcatgcagttttgtaatt |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46763869 |
ttttgttttagtccctgtaccaacttttcagtcctacaaatcacaaaaccttatacttgtagtccctctttagagactaaaatcatgcagttttgtaatt |
46763770 |
T |
|
| Q |
318 |
tgtagagactcagaagtgtgagtagggactaaaagcagaatttgagataattatatgaactaaaaacatatttaacggaacaattattgccaatttcggg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46763769 |
tgtagagactcagaagtgtgagtagggactaaaagcagaatttgagataattatatgaactaaaaacatatttaaccgaacaattattgccaatttcggg |
46763670 |
T |
|
| Q |
418 |
agaagactataaatgtcgtcaagcaacaattcttacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763669 |
agaagactataaatgtcgtcaagcaacaattcttacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttg |
46763570 |
T |
|
| Q |
518 |
gtggggatcttccagctacattccatgttgctacaaaaatgctgctcaatgttcacaattcatgagaaacagaacaaagccttttattttatttttcttg |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46763569 |
gtggggatcttccagctacattccatgttgctacaaaaatgctgctcaatgttcacaattcatgagaaacagaacaaagccttttattttatttttcttg |
46763470 |
T |
|
| Q |
618 |
gtaaaattgaagtaggatacctatagttctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaa |
717 |
Q |
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| T |
46763469 |
gtaaaattgaagtaggatacctatagttctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaa |
46763370 |
T |
|
| Q |
718 |
cttctctg |
725 |
Q |
| |
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|||||||| |
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| T |
46763369 |
cttctctg |
46763362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 542
Target Start/End: Complemental strand, 31829412 - 31829319
Alignment:
| Q |
449 |
cttacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattcca |
542 |
Q |
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||||||| ||||||||||| ||||| ||||| || | |||||||||||| || | | | |||| ||| || || |||| ||||||||||||||| |
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| T |
31829412 |
cttaccctagaacataaatatcagcaggaggagatgtatgaagccaatcttccagatttaaataactcggaggagatcgtccagctacattcca |
31829319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 45 - 123
Target Start/End: Complemental strand, 1084405 - 1084327
Alignment:
| Q |
45 |
ccattttttggcagggccattgtcctctgcccctaggatattaccggcattcaacggaactatctcttgaaatctgcaa |
123 |
Q |
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||||||||||||||||||||| || |||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
1084405 |
ccattttttggcagggccattatcttctgcccctaagatattaccagcattcaagggaactatctcttgaaatctgcaa |
1084327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 634 - 725
Target Start/End: Complemental strand, 1083826 - 1083735
Alignment:
| Q |
634 |
atacctatagttctgcacatcgataattcgaggatggtcaagattcattcttcctcgcctaacctgactcgtgctcctgctaaacttctctg |
725 |
Q |
| |
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|||||||||||| || ||||| ||||||| |||||||||||| ||||| || |||||||||||||||||| | |||||||||| ||||||| |
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| T |
1083826 |
atacctatagttatggacatctataattctaggatggtcaaggttcatcctcgctcgcctaacctgactcgagttcctgctaaatttctctg |
1083735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 451 - 565
Target Start/End: Complemental strand, 1084013 - 1083899
Alignment:
| Q |
451 |
tacccaagaacataaatgtcagctggaggtgaggaatgaagccaatcatctacactcaaattacttggtggggatcttccagctacattccatgttgcta |
550 |
Q |
| |
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||||||||||||||||| || || || ||||||| ||||||||||| | || ||||||||||| || ||||||||||| || ||||||||||| | | |
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| T |
1084013 |
tacccaagaacataaatatctgcaggcggtgaggcgtgaagccaatcgtttatgctcaaattactcggcggggatcttccggccacattccatgtaccaa |
1083914 |
T |
|
| Q |
551 |
caaaaatgctgctca |
565 |
Q |
| |
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||||||||||||||| |
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| T |
1083913 |
caaaaatgctgctca |
1083899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 28315234 - 28315283
Alignment:
| Q |
344 |
gactaaaagcagaatttgagataattatatgaactaaaaacatatttaac |
393 |
Q |
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||||||||||| ||||||| ||| ||||||| ||||||||||| |||||| |
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| T |
28315234 |
gactaaaagcaaaatttgatatatttatatggactaaaaacatttttaac |
28315283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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