View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_21 (Length: 290)
Name: NF14623_low_21
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 13614857 - 13614594
Alignment:
| Q |
18 |
gtaaccacccaatagcatcagggatttgaagaagattgcagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaacaataaacc |
117 |
Q |
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| T |
13614857 |
gtaaccacccaatagcatcagggatttgaagaagattgcagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaacaataaacc |
13614758 |
T |
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| Q |
118 |
aattgaatcttctcgctttcgaaaaattgaaaatccaaagtgacgctttagaactttgtggatgcaggaagttgattggtattgggtagtactttctttg |
217 |
Q |
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| T |
13614757 |
aattgaatcttctcgctttcgaaaaattgaaaatccaaagtgacgctttagaactttgtggatgcaggaagttgattggtattgggtagtactttctttg |
13614658 |
T |
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| Q |
218 |
ttatcatcaagcatcttcaaattttctacttgcctttgtctctttaacaacttattattaagta |
281 |
Q |
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| T |
13614657 |
ttatcatcaagcatcttcaaattttctacttgcctttgtctctttaacaacttattattaagta |
13614594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 26 - 281
Target Start/End: Complemental strand, 31247079 - 31246827
Alignment:
| Q |
26 |
ccaatagcatcagggatttgaagaagattgcagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaacaataaaccaattgaat |
125 |
Q |
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| T |
31247079 |
ccaattgcattagggatttgaaaaagattgcagaaacttaggtcaagatattgcagacatgacagacaagacaacgaaggcaacaataaaccaaccgaat |
31246980 |
T |
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| Q |
126 |
cttctcgctttcgaaaaattgaaaatccaaagtgacgctttagaactttgtggatgcaggaagttgattggtattgggtagtactttctttgttatcatc |
225 |
Q |
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| T |
31246979 |
cttcgcgttttcgaaaaaaagaaaatggaaagtgcggctttagaactttgtagatgaaggatgttggttggtattgagtagtacattct---ttaatatc |
31246883 |
T |
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| Q |
226 |
aagcatcttcaaattttctacttgcctttgtctctttaacaacttattattaagta |
281 |
Q |
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| T |
31246882 |
aagcatctccaaatgttcattttgcctttgtctctctaacatcttattattaagta |
31246827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 31212670 - 31212621
Alignment:
| Q |
24 |
acccaatagcatcagggatttgaagaagattgcagaaacttatgtcaaga |
73 |
Q |
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| T |
31212670 |
acccaattgcattagggacttgaagaagattgcagaaacttaggtcaaga |
31212621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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