View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_27 (Length: 259)
Name: NF14623_low_27
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 32967717 - 32967962
Alignment:
| Q |
1 |
atgaaattaatgaagcatgatggtggtgacaaaaacatatattaacccatttaaatttcaggatcattttctcggtcagccgtaaatcacaacgcaggtg |
100 |
Q |
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| T |
32967717 |
atgaaatcaatgaagcatgatggtggtgacaaaaacatatattaacccatttaaatttcaggatcattttctcggtcagccgtaaatcacaacgcaggtg |
32967816 |
T |
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| Q |
101 |
caaaaactgcaatgtcaaacttagtaatgtctgtgacagtcatggtgacactcctgttacttatgccattgtttcattacacacctaatgttgtattggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32967817 |
caaaaactgcaatgtcaaacttagtaatgtctgtgacagtcatggtgacactcctgttacttatgccattgtttcattacacacctaatgttgtattggg |
32967916 |
T |
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| Q |
201 |
tgcaatcataataacagcagtgattggtctcattgatatctctgct |
246 |
Q |
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| T |
32967917 |
tgcaatcataataacagcagtgattggtctcattgatatctctgct |
32967962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 32958548 - 32958665
Alignment:
| Q |
122 |
tagtaatgtctgtgacagtcatggtgacactcctgttacttatgccattgtttcattacacacctaatgttgtattgggtgcaatcataataacagcagt |
221 |
Q |
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|||||||||| |||||||| |||||||||||||| || |||||||||||||| || ||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
32958548 |
tagtaatgtccgtgacagtgatggtgacactcctttttcttatgccattgttccaatacacacctaatgttgtattgggcgcaatcatagtcacagcagt |
32958647 |
T |
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| Q |
222 |
gattggtctcattgatat |
239 |
Q |
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| T |
32958648 |
gattggcctcattgatat |
32958665 |
T |
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