View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_3 (Length: 646)
Name: NF14623_low_3
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 134 - 498
Target Start/End: Original strand, 16857873 - 16858236
Alignment:
| Q |
134 |
caatctatcatgatcttttcgattgcgaccacattaactgaaacagattttctcttcttgacacattttcctttgatggaaaatggttttgctttgaatc |
233 |
Q |
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| T |
16857873 |
caatctatcatgatctttgtgattgcaaccacattaactgaaacaaattttctcttcttgacacattttcctttgatggaaaatggttttgccttgaatc |
16857972 |
T |
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| Q |
234 |
cagcaccttgatgaatcactttccttttgccttgacacatttaaggttttgatcggagggtttgtgaaaggaaggttttttgtgaattcgaaaagacacc |
333 |
Q |
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| T |
16857973 |
caacaccttgatgaatcactttccttttgccttgacacattttagggtttgatcgtagggtttgtgaaaggaaggttttttgtgaatacaaaaagacacc |
16858072 |
T |
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| Q |
334 |
aacacaaagacacaagtggtgaataagaatgtaatggaagaatgaatgtgtttttgttagttagggttttggtgttgttgtctagttaaaacataaataa |
433 |
Q |
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| T |
16858073 |
aacacaaagacacaagcggtgaataagaatgtaatggaagaatgaatgtgtttttgttagttagggttttggtgttgttgtctagtt-aaacataagtaa |
16858171 |
T |
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| Q |
434 |
ccttgattgaactgcgggaagcttccttccaacggtaataaaatcgtgtagttaactaaaaacta |
498 |
Q |
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| T |
16858172 |
ccttgattgaactgcgggaagcttccttccaacggtaataaaatcgtgtaaataactaaaaacta |
16858236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 558 - 639
Target Start/End: Original strand, 16858295 - 16858376
Alignment:
| Q |
558 |
aattggaccgtttctctaaattgtaaaattaattgcttgaattacaaaattaattaaagcttaaatgcacttttggtcccct |
639 |
Q |
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| T |
16858295 |
aattggaccgtttctctaaattgtaaaattaattgcttgaattacaaaattaattaaggcttaaatgcacttttggccccct |
16858376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 16857739 - 16857820
Alignment:
| Q |
1 |
cttgtcgactttaacccttcatttgtctccaattagataacgtcttcttcacttcaacatcatcaacaaaaggaccaacaag |
82 |
Q |
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| T |
16857739 |
cttgtcgaacttgacccttcatttgtctccaattagacaacgtcttcttcacttcaacatcatcaacaaaaggaccaacaag |
16857820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17441034 - 17440953
Alignment:
| Q |
1 |
cttgtcgactttaacccttcatttgtctccaattagataacgtcttcttcacttcaacatcatcaacaaaaggaccaacaag |
82 |
Q |
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| T |
17441034 |
cttgacgactttgactcttcagttgtctccaattagacaaagtgttcttcacttgaggatcatcaatagaaggatcaacaag |
17440953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 28724806 - 28724755
Alignment:
| Q |
181 |
ttttctcttcttgacacattttcctttgatggaaaatggttttgctttgaat |
232 |
Q |
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| T |
28724806 |
ttttctcttcttgatacattttcctttgagggaaaatggttttgccttgaat |
28724755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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