View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_31 (Length: 251)
Name: NF14623_low_31
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_31 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 39919268 - 39919035
Alignment:
| Q |
18 |
agaaaccaggtttggatttagtccaatcaccaacagaaccatcactataatcttctcctaatctcttaatacaccacaaatcttcttcacaagacaaaac |
117 |
Q |
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| T |
39919268 |
agaaaccaggtttggatttagtccaatcaccaacagaaccatcactataatcttctcctaatctcttaatacaccacaaatcttcttcacaagacaaaac |
39919169 |
T |
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| Q |
118 |
cttccaatgaggaatagcaaaacgtaacggttcacagctagaaacttcagttgccacagcactacacccattttccattgcaagattatgagcaaaacca |
217 |
Q |
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| T |
39919168 |
cttccaatgaggaatagcaaaacgtaacggttcacagctagaaacttcagttgccacagcactacacccattttccattgcaagattatgagcaaaacca |
39919069 |
T |
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| Q |
218 |
cacaaagctttcaccatcttcaacacttctgctc |
251 |
Q |
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| T |
39919068 |
cacaaagctttcaccatcttcaacacttctgctc |
39919035 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 241
Target Start/End: Original strand, 5544805 - 5545011
Alignment:
| Q |
35 |
ttagtccaatcaccaacagaaccatcactataatcttctcctaatctcttaatacaccacaaatcttcttcacaagacaaaaccttccaatgaggaatag |
134 |
Q |
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| T |
5544805 |
ttagtccaatcaccgatagaaccatcactataatcatcaacaagcctcttaatacaccataaatcattggcacaagatagcattttccaatgaggtatac |
5544904 |
T |
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| Q |
135 |
caaaacgtaacggttcacagctagaaacttcagttgccacagcactacacccattttccattgcaagattatgagcaaaaccacacaaagctttcaccat |
234 |
Q |
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| T |
5544905 |
caaaccttaatggttcacatgaagcaacctcagtagccacaaccccacacccacattccatagccaaattatgtgcaaactcacaaagagccttaaccat |
5545004 |
T |
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| Q |
235 |
cttcaac |
241 |
Q |
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| T |
5545005 |
cttcaac |
5545011 |
T |
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