View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14623_low_4 (Length: 606)

Name: NF14623_low_4
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14623_low_4
NF14623_low_4
[»] chr2 (2 HSPs)
chr2 (22-597)||(33077410-33078002)
chr2 (103-140)||(26227842-26227879)
[»] chr8 (2 HSPs)
chr8 (425-558)||(40818984-40819119)
chr8 (109-155)||(22721091-22721137)
[»] chr5 (2 HSPs)
chr5 (109-225)||(22553304-22553419)
chr5 (109-154)||(17344866-17344911)
[»] chr7 (8 HSPs)
chr7 (105-192)||(12168208-12168295)
chr7 (108-154)||(151796-151842)
chr7 (109-193)||(8231943-8232027)
chr7 (113-155)||(15826644-15826686)
chr7 (108-140)||(2370022-2370054)
chr7 (113-153)||(4452623-4452663)
chr7 (109-153)||(4452945-4452989)
chr7 (111-155)||(37586537-37586581)
[»] chr1 (4 HSPs)
chr1 (107-195)||(48955347-48955435)
chr1 (109-154)||(3368090-3368135)
chr1 (108-153)||(10884523-10884568)
chr1 (108-140)||(24966018-24966050)
[»] chr6 (5 HSPs)
chr6 (110-217)||(14283339-14283446)
chr6 (104-154)||(11182096-11182146)
chr6 (109-154)||(12404796-12404841)
chr6 (70-108)||(10744363-10744401)
chr6 (109-154)||(2637760-2637805)
[»] chr4 (7 HSPs)
chr4 (305-343)||(49360267-49360305)
chr4 (108-192)||(26253007-26253091)
chr4 (259-303)||(49360294-49360338)
chr4 (108-154)||(14043021-14043067)
chr4 (109-155)||(14044933-14044979)
chr4 (109-166)||(49360409-49360467)
chr4 (108-140)||(54804912-54804944)
[»] chr3 (4 HSPs)
chr3 (109-154)||(53359260-53359305)
chr3 (109-155)||(11422938-11422984)
chr3 (109-155)||(44893489-44893535)
chr3 (109-154)||(24398090-24398135)
[»] scaffold0103 (1 HSPs)
scaffold0103 (109-154)||(2204-2249)
[»] scaffold0046 (1 HSPs)
scaffold0046 (108-140)||(75339-75371)


Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 22 - 597
Target Start/End: Original strand, 33077410 - 33078002
Alignment:
Q  22 gtgcatacaagcttgttgattatacttttaatgtgtggggctttacttagtggaatgacattccttcttttgttagagatgacttttgaattctgctctt 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33077410 gtgcatacaagcttcttgattatacttttaatgtgtggggctttacttagtggaatgacattctttcttttgttagagatgacttttgaattctgctctt 33077509  T
Q  122 tacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagttatattttctgcgggacttaagtcatgct 221  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| || | |||| | ||||||||||||| ||||||||  || |||| ||| |||    
T  33077510 tacccaacaaaaattgctcgctctcaactgaaatatcgaaattacctctgcatgagttgattcatgctagttatgttttctgcatgagttaactcacgct 33077609  T
Q  222 gcgtaacaca--tcacgctgctttctttttctatcagtcgtgttgcttttcaaccaaaggtcagttgcgttgcttttcaatcttccttttcaatcttttt 319  Q
    |||| |   |  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33077610 gcgtgatttaactcacgctgctttctttttctatcagtggtgttgcttttcaaccaaaggtcagttgcgttgcttttcaatcttccttttcaatcttttt 33077709  T
Q  320 gtcatatagtgaattaatggatgaatgctgtttgctgcaaggaatccttattttatgtccacgatatttactgc--------cactactaatcattaa-- 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || || |  || ||||      
T  33077710 gtcatatagtgaattaatggatgaatgctgtttgctgcaaggaatccttattttatgtccacgatatttactgcaaggaattcattatttttccttaaaa 33077809  T
Q  410 -----gtaattcattattttaacagataaactaactaatccgataaattgagccgcgttggctatgctaatctaatatttttataatctctgggacgttt 504  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  33077810 aaaaagtaattcattattttaacagataaactaactaatccgataaattgagccgcgttggctatgctaatctaatattttaataatctttgggacgttt 33077909  T
Q  505 ctacgaccaatctatgctaaaacctgctttaatggaatctgaatcatatcattcctcttatgtcttccaagtctactactcttcttctctctc 597  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33077910 ctacgaccaatttatgctaaaacctgctttaatggaatctgaatcatatcattccacttatgtcttccaagtctactactcttcttctctctc 33078002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 26227879 - 26227842
Alignment:
Q  103 acttttgaattctgctctttacccaacaaaaaatgctc 140  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  26227879 acttatgaatcctgctctttacccaacaaaaaatgctc 26227842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 425 - 558
Target Start/End: Complemental strand, 40819119 - 40818984
Alignment:
Q  425 aacagataaactaactaatccgataaattgagccgcgttggctatgctaatctaatatttttataatctctgggacgtttctacgaccaatctat--gct 522  Q
    |||| ||||||||| | ||||||  ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||   ||    
T  40819119 aacacataaactaagtcatccgaacaattgagccgcgttggcaatgctaatctaatatttttataatctgtgggacgtttctacgaccaatctattgcct 40819020  T
Q  523 aaaacctgctttaatggaatctgaatcatatcattc 558  Q
    ||||| ||||||||||| || |||||||||||||||    
T  40819019 aaaacgtgctttaatgggatatgaatcatatcattc 40818984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 22721091 - 22721137
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaat 155  Q
    ||||| |||||||||||||||||||| ||||| ||| ||||||||||    
T  22721091 gaattatgctctttacccaacaaaaattgctccctcccaactgaaat 22721137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 22553419 - 22553304
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagttatattttctgcggga 208  Q
    ||||||| |||||||||||||||||| ||| ||||| ||||||||||  ||||||| || | |||| |||||||||| ||||||||| || ||||||  |    
T  22553419 gaattctactctttacccaacaaaaattgcccgctcccaactgaaattccgaaattgcc-ctgcgtgagttaactcacgctagttatgttgtctgcgtaa 22553321  T
Q  209 cttaagtcatgctgcgt 225  Q
    ||||||||| |||||||    
T  22553320 cttaagtcacgctgcgt 22553304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 17344911 - 17344866
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 154  Q
    ||||| |||||||||||||| ||||| ||||||||| |||||||||    
T  17344911 gaattatgctctttacccaataaaaattgctcgctcccaactgaaa 17344866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 12168208 - 12168295
Alignment:
Q  105 ttttgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagt 192  Q
    ||||||||||||||||||||||||||| || ||||||||| |||||||||    |||| |||||| ||  | ||||||||||||||||    
T  12168208 ttttgaattctgctctttacccaacaacaattgctcgctcccaactgaaaagatgaaaatacctctgcacatgttaactcatgctagt 12168295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 151842 - 151796
Alignment:
Q  108 tgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 154  Q
    ||||||||||||||||||||||||||| |||||||| |||| |||||    
T  151842 tgaattctgctctttacccaacaaaaattgctcgctttcaattgaaa 151796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 8232027 - 8231943
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagtt 193  Q
    |||||||||||||||||||||| ||| ||| ||| | ||||||||||  ||||||| |  | |||| |||||||||| |||||||    
T  8232027 gaattctgctctttacccaacagaaattgcccgcccccaactgaaattccgaaattgcacctgcgtgagttaactcacgctagtt 8231943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 15826686 - 15826644
Alignment:
Q  113 tctgctctttacccaacaaaaaatgctcgctctcaactgaaat 155  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||    
T  15826686 tctgctctttacccaacagaaattgctcgctcccaactgaaat 15826644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 2370054 - 2370022
Alignment:
Q  108 tgaattctgctctttacccaacaaaaaatgctc 140  Q
    ||||||||||||||||||||||||||| |||||    
T  2370054 tgaattctgctctttacccaacaaaaattgctc 2370022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 4452663 - 4452623
Alignment:
Q  113 tctgctctttacccaacaaaaaatgctcgctctcaactgaa 153  Q
    |||||||||||||||||||||| ||||||||| ||| ||||    
T  4452663 tctgctctttacccaacaaaaattgctcgctcccaattgaa 4452623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 4452989 - 4452945
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaa 153  Q
    |||||||||||||||| ||||||||| ||||||||| ||| ||||    
T  4452989 gaattctgctctttactcaacaaaaattgctcgctcccaattgaa 4452945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 37586581 - 37586537
Alignment:
Q  111 attctgctctttacccaacaaaaaatgctcgctctcaactgaaat 155  Q
    ||||||||||||| |||||| ||| ||||||||| ||||||||||    
T  37586581 attctgctctttatccaacagaaattgctcgctcccaactgaaat 37586537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 48955347 - 48955435
Alignment:
Q  107 ttgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagttat 195  Q
    |||||||||||||||||||||||| ||| |||||||||  |||||||||   |||| | || | |||| |||||||||| |||||||||    
T  48955347 ttgaattctgctctttacccaacagaaattgctcgctcctaactgaaattctgaaactgcccctgcgtgagttaactcacgctagttat 48955435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 3368090 - 3368135
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 154  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||||    
T  3368090 gaattatgctctttacccaacagaaattgctcgctcccaactgaaa 3368135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 10884568 - 10884523
Alignment:
Q  108 tgaattctgctctttacccaacaaaaaatgctcgctctcaactgaa 153  Q
    ||||||||||||||||||||| ||||| |||||  |||||||||||    
T  10884568 tgaattctgctctttacccaaaaaaaattgctcattctcaactgaa 10884523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 24966050 - 24966018
Alignment:
Q  108 tgaattctgctctttacccaacaaaaaatgctc 140  Q
    ||||||||||||||||||||||||||| |||||    
T  24966050 tgaattctgctctttacccaacaaaaattgctc 24966018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 14283339 - 14283446
Alignment:
Q  110 aattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagttatattttctgcgggac 209  Q
    ||||||||||||||| ||||| ||| ||||||||| |||||||||   | | |||||| | |||| |||||||||| ||||||| | ||||||||  ||     
T  14283339 aattctgctctttactcaacagaaattgctcgctcccaactgaaaagaccatattacccctgcgtgagttaactcacgctagttgtgttttctgcatgag 14283438  T
Q  210 ttaagtca 217  Q
    ||||||||    
T  14283439 ttaagtca 14283446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 154
Target Start/End: Complemental strand, 11182146 - 11182096
Alignment:
Q  104 cttttgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 154  Q
    |||||||||| |||||||||||||||||||| || |||||| |||||||||    
T  11182146 cttttgaattatgctctttacccaacaaaaattgttcgctcccaactgaaa 11182096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 12404796 - 12404841
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 154  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||||    
T  12404796 gaattctgctctttacccaacaaaaattgctcgctcccaacagaaa 12404841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 10744401 - 10744363
Alignment:
Q  70 agtggaatgacattccttcttttgttagagatgactttt 108  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  10744401 agtggaatgacattccttcttttattaaagatgactttt 10744363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 2637805 - 2637760
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 154  Q
    ||||||||||| |||||||||||||| ||||||||| ||| |||||    
T  2637805 gaattctgctccttacccaacaaaaattgctcgctcccaattgaaa 2637760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 343
Target Start/End: Complemental strand, 49360305 - 49360267
Alignment:
Q  305 cttttcaatctttttgtcatatagtgaattaatggatga 343  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  49360305 cttttcaatctttttgtcatatagtgaattaatagatga 49360267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 26253091 - 26253007
Alignment:
Q  108 tgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaatatcgaaattacctcagcgtaagttaactcatgctagt 192  Q
    |||||||||||||||| |||||| ||| ||||||||| ||||||||||  | | | || ||| |||| |||||||||| ||||||    
T  26253091 tgaattctgctctttatccaacagaaattgctcgctcccaactgaaatgacaataatatctctgcgtgagttaactcacgctagt 26253007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 49360338 - 49360294
Alignment:
Q  259 gtgttgcttttcaaccaaaggtcagttgcgttgcttttcaatctt 303  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||    
T  49360338 gtgttgcttttcaaccaaagaccagttgcattgcttttcaatctt 49360294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 14043021 - 14043067
Alignment:
Q  108 tgaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 154  Q
    |||||||||||||||| |||||| ||| ||||||||| |||||||||    
T  14043021 tgaattctgctctttatccaacagaaattgctcgctcccaactgaaa 14043067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 14044979 - 14044933
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaat 155  Q
    |||||||| |||||||| || ||||||||||||||| ||||||||||    
T  14044979 gaattctgttctttaccaaataaaaaatgctcgctcccaactgaaat 14044933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 49360467 - 49360409
Alignment:
Q  109 gaattctgctctttacccaacaaaaaat-gctcgctctcaactgaaatatcgaaattac 166  Q
    |||| ||||||||||| ||||||| ||| |||||||| ||||||||||| |||||||||    
T  49360467 gaatactgctctttacacaacaaataattgctcgctcccaactgaaataccgaaattac 49360409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 140
Target Start/End: Original strand, 54804912 - 54804944
Alignment:
Q  108 tgaattctgctctttacccaacaaaaaatgctc 140  Q
    ||||||||||||||||||||||||||| |||||    
T  54804912 tgaattctgctctttacccaacaaaaattgctc 54804944  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 53359305 - 53359260
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 154  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||    
T  53359305 gaattctgctttttacccaacaaaaattgctcgctcccaactgaaa 53359260  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 11422938 - 11422984
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaat 155  Q
    |||||||||||||||| ||||||||| |||||| || ||||||||||    
T  11422938 gaattctgctctttactcaacaaaaattgctcgttcccaactgaaat 11422984  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 44893489 - 44893535
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaat 155  Q
    |||||||| |||||||||||| |||| |||||| |||||||||||||    
T  44893489 gaattctgttctttacccaaccaaaattgctcgttctcaactgaaat 44893535  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 24398090 - 24398135
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 154  Q
    ||||| |||||||||||||||| ||| ||||||||| |||||||||    
T  24398090 gaattatgctctttacccaacataaattgctcgctcccaactgaaa 24398135  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 2204 - 2249
Alignment:
Q  109 gaattctgctctttacccaacaaaaaatgctcgctctcaactgaaa 154  Q
    ||||||||||| |||||||||||||| ||||||||| ||| |||||    
T  2204 gaattctgctccttacccaacaaaaattgctcgctcccaattgaaa 2249  T

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Target: scaffold0046 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 75371 - 75339
Alignment:
Q  108 tgaattctgctctttacccaacaaaaaatgctc 140  Q
    ||||||||||||||||||||||||||| |||||    
T  75371 tgaattctgctctttacccaacaaaaattgctc 75339  T

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