View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_44 (Length: 206)
Name: NF14623_low_44
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 38794197 - 38794373
Alignment:
| Q |
10 |
agcagcacagacatcttttcaagactcgaaaacattctaagaaccctagccgaatactctctcatcaaaaccttgtggacttagactaacaatattctta |
109 |
Q |
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| T |
38794197 |
agcagcatacacatcttttcaagactcgaaaacattctaagaaccctagccgaatactatctcatcaaaaccttgtggacttagactaacaatattctta |
38794296 |
T |
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| Q |
110 |
ctattatttgagctcactaccacagcatggtagattcatcccaaagttaatagtgtccatttggggggcgtttgtatg |
187 |
Q |
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| T |
38794297 |
ctattatttgagctcactaccacagcat-gtagattcatcccaaagttaatagtgtccatttagggggcgtttgtatg |
38794373 |
T |
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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 31566247 - 31566396
Alignment:
| Q |
37 |
gaaaacattctaagaaccctagccgaatactctctcatcaaaaccttgtggacttagactaacaatattcttactattatttgagctcactaccacagca |
136 |
Q |
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| T |
31566247 |
gaaaacatcctatgaacccttgccaaatactatctcatcacaaccttgtgaacttggaataataatatcctaaatattatttgagctgactactgtagca |
31566346 |
T |
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| Q |
137 |
tggtagattcatcccaaagttaatagtgtccatttggggggcgtttgtat |
186 |
Q |
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| T |
31566347 |
tggtagattcaccccaaagttcatagtgtccattaagggggcatttgtat |
31566396 |
T |
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