View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_46 (Length: 201)
Name: NF14623_low_46
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 38995549 - 38995715
Alignment:
| Q |
22 |
catcaataaaaacaaacattaatgtagcgtgtccttgtgtctctaagaacacaacataatttctcaaacctttaacataaaaatggaaatcaaagtttta |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38995549 |
catcaataaaaacaaacattaatgtagcgtgtccttgtgtctctaagaacacaacataatttctcaaacctttaacataaaaatggaaatcaaagtttta |
38995648 |
T |
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| Q |
122 |
agatgaaacct-nnnnnnntatggagctaaaacataaagaaaaagaagaatccccatcatccacaca |
187 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38995649 |
agatgaaacctaaaaaaaatatggagctaaaacataaagaaaaagaagaatccccatcatccacaca |
38995715 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 21924700 - 21924638
Alignment:
| Q |
36 |
aacattaatgtagcgtgtccttgtgtctctaagaacacaacataatttctcaaacctttaaca |
98 |
Q |
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|||| |||| || ||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
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| T |
21924700 |
aacactaatttaacgtgtccttgtgtctctaagaacgcaacacaatttctcaaaccattaaca |
21924638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 39483487 - 39483563
Alignment:
| Q |
22 |
catcaataaaaacaaacattaatgtagcgtgtccttgtgtctctaagaacacaacataatttctcaaacctttaaca |
98 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||||||||||| |||||| |
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| T |
39483487 |
catcaataaaaacaaacactaatttagcgtgtccttgtgtctctaagaacataacacaatttctcaaaccattaaca |
39483563 |
T |
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