View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14623_low_5 (Length: 523)
Name: NF14623_low_5
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 15737124 - 15736828
Alignment:
| Q |
14 |
cataggcaaccacataatgtgggtaaaaattgctttttgtaccattcaaaaatagtttcatttcatttgtgttgctgaacatcacctcagaattaagtgt |
113 |
Q |
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| T |
15737124 |
cataggcaaccacataatgtgggtaaaaattgctttttgtaccattcaaaaatagtttcatttcatttgtgttgctgaacatcacctcagaattaagtgt |
15737025 |
T |
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| Q |
114 |
aacaaatgtgtagataacttttgctattggccttgctctatatcaaatcaaacacagaaaacatgttcaatattctcaaatgt----tttaattcgatct |
209 |
Q |
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| T |
15737024 |
aacaaatgtgtagataacttttgctattggccttgctctatataaaatcaaacacagaaaacatgttcaatattctcaaatgttgtattgaattcgatct |
15736925 |
T |
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| Q |
210 |
atctaaacatcaaaacgtttgcttgcatgaccaaatcaatcatatttatatatggcttgaccccgcctgatgaaaatttgctaagcagttctatctt |
306 |
Q |
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| T |
15736924 |
atctaaacatcaaaacgtttgcttgcatgaccaaatcaatcatatttatatatggcttgaccccgcctgatgaaaatttgctaagcagttctatctt |
15736828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 348 - 506
Target Start/End: Complemental strand, 15736786 - 15736628
Alignment:
| Q |
348 |
gtacttttgtatacacgatttacaatctgctgtcattcatcagacaggtctttataataaaaaccattaccattgctctcatcagccaaagatttagttt |
447 |
Q |
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| T |
15736786 |
gtactttggtataggcgatttacaatctgctgtcattcatcagacaggtctttataataaaaaccattaccattgctctcatcagccaaagatttagttt |
15736687 |
T |
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| Q |
448 |
tggttcttgatgatttgctggattctgaggttttatcgactctttctgcctgcaactcc |
506 |
Q |
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| T |
15736686 |
tggttcttgatgatttgctggattctgaggttttatcgactctttctgcctgcaactcc |
15736628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 17741142 - 17740848
Alignment:
| Q |
20 |
caaccacataatgtgggtaaaaattgcttttt-gtaccattcaaaaa----tagtttcatttcatttgtgt-tgctgaacatcacctcagaattaagtgt |
113 |
Q |
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| T |
17741142 |
caaccacatactatgggtaaaaaatgcttttttgtaccatatacaaacaactagtttcatttcatttgtgtatgctgaatatcgcctcagaattatgacc |
17741043 |
T |
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| Q |
114 |
aacaaatgtgtagataacttttgctattggccttgctctatatcaaatcaaacacaga--aaacatgttcaatattctcaaatgtt----ttaattcgat |
207 |
Q |
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| T |
17741042 |
ctaaaataagtggataacttttgtcattggccttgctggatattaaatcaaacacagagaaaacttgttcaatgttctcagatgttgggttgaattcggt |
17740943 |
T |
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| Q |
208 |
ctatctaaacatcaaaacgtttgcttgcatgaccaaatcaatcatatttatatatggcttgaccccgcctgatgaaaatttgctaagcagttcta |
302 |
Q |
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| T |
17740942 |
atatctaaacaacaaaacgtttgcttgcatgaccaactcaatcatatttatatataacttgaacccacctgatgaaaatttgctaagcaattcta |
17740848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 367 - 506
Target Start/End: Complemental strand, 17740819 - 17740677
Alignment:
| Q |
367 |
ttacaatctgctgtcattcatcagacaggtctttat---aataaaaaccattaccattgctctcatcagccaaagatttagttttggttcttgatgattt |
463 |
Q |
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||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| ||| |
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| T |
17740819 |
ttacaatctgctgtcattcatcagacaggtcatcatcataataaaaatcattaccattgctctcatcaacaaaagatttagttttggttcttgatggttt |
17740720 |
T |
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| Q |
464 |
gctggattctgaggttttatcgactctttctgcctgcaactcc |
506 |
Q |
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| T |
17740719 |
gctagagtttgaggttttattgtctctttcagcctgcaactcc |
17740677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 464
Target Start/End: Complemental strand, 17754806 - 17754707
Alignment:
| Q |
365 |
atttacaatctgctgtcattcatcagacaggtctttataataaaaaccattaccattgctctcatcagccaaagatttagttttggttcttgatgatttg |
464 |
Q |
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| T |
17754806 |
atttacaatatgctgttattcatcagaaaactcgtcataataaaaatcactgtcatcactctcatcaaccaaatatttacttctggttcttgatgatttg |
17754707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 464
Target Start/End: Complemental strand, 17763793 - 17763694
Alignment:
| Q |
365 |
atttacaatctgctgtcattcatcagacaggtctttataataaaaaccattaccattgctctcatcagccaaagatttagttttggttcttgatgatttg |
464 |
Q |
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| T |
17763793 |
atttacaatatgctgttattcatcagaaaactcgtcataataaaaatcactgtcatcactctcatcaaccaaatatttacttctggttcttgatgatttg |
17763694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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