View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14623_low_7 (Length: 417)
Name: NF14623_low_7
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14623_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Complemental strand, 21181857 - 21181478
Alignment:
| Q |
20 |
gctgattcttggagaaaggggaataggtcagctggatgtgtcaggataaacgaattatcctgcagcagtaaaaatagcatagatggattcaaacgtttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21181857 |
gctgattcttggagaaaggggaataggtcagctggatgtgtcaggataaacgaattatcctgcaacagtaaaaatagcatagatggattcaaacgtttca |
21181758 |
T |
|
| Q |
120 |
gttcagttgaattacctccatacgaagtgaacctacagttcgatgcgctctcccagtgtaacaacacttgttacaccaattgttcttgtgttgcttatgc |
219 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21181757 |
gtttagttgaattacctccatatgaagtgaacctacagttcgatgcgctctcacagtgtaacaacacttgttacaccaattgttcttgtgttgcttatgc |
21181658 |
T |
|
| Q |
220 |
ttatgattttaacggcaactgcaagttgtggaatgatcaagtacagactctgaagaacatctcaactgatattcaagacggtaataataataataaacca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
21181657 |
ttatgattttaacggcaactgcaagttgtggaatgatcaagtacagactctgaagaacatctcaactgaaattcaagaccgtaataata---ataaacca |
21181561 |
T |
|
| Q |
320 |
aatttttatctcagacttgctggctcagacttgcttcccccaagtaagttgaaggaacctactttatctttccttttcttttt |
402 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21181560 |
aatttttatctcagacttgctggctcggacttgcttcccccaagtaagttgaaggaacctactttacctttccttttcttttt |
21181478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 23187428 - 23187519
Alignment:
| Q |
200 |
tgttcttgtgttgcttatgcttatgatttt---aacggcaactgcaagttgtggaatgatcaagtacagactctgaagaacatctcaactga |
288 |
Q |
| |
|
|||||||||||| ||||||||||||| || ||||| ||||||| | |||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
23187428 |
tgttcttgtgttctttatgcttatgatatttctaacggtaactgcatgctgtggaatgatcaagtaccgactctgaagaacacctcgactga |
23187519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 23187248 - 23187294
Alignment:
| Q |
23 |
gattcttggagaaaggggaataggtcagctggatgtgtcaggataaa |
69 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||||||||| ||||| |
|
|
| T |
23187248 |
gattcttggagtaagggggataggtcagcgggatgtgtcagaataaa |
23187294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 23178273 - 23178348
Alignment:
| Q |
198 |
attgttcttgtgttgcttatgcttatgatttta---acggcaactgcaagttgtggaatgatcaagtacagactct |
270 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||| |||||| |
|
|
| T |
23178273 |
attgctcttgtgttgcttatgcttatgatttttttgacggtgcctgcatgttatggaatgatcaagtaccgactct |
23178348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University