View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14623_low_9 (Length: 405)

Name: NF14623_low_9
Description: NF14623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14623_low_9
NF14623_low_9
[»] chr6 (9 HSPs)
chr6 (1-405)||(15964396-15964800)
chr6 (50-124)||(17726436-17726510)
chr6 (241-405)||(17726633-17726800)
chr6 (84-141)||(17592526-17592583)
chr6 (248-332)||(17699003-17699087)
chr6 (249-352)||(17592694-17592797)
chr6 (78-125)||(17698833-17698880)
chr6 (50-132)||(17735146-17735228)
chr6 (248-377)||(17735350-17735479)


Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 15964800 - 15964396
Alignment:
Q  1 ccatttaaaaacttatcatctttaatattgtaatgtaaatagtattgatctttgaaaatgaaaacttcattttcaaagtgagtattaaaagctgcatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15964800 ccatttaaaaacttatcatctttaatattgtaatgtaaatagtattgatctttgaaaatgaaaacttcattttcaaagtgagtattaaaagctgcatcaa 15964701  T
Q  101 tacccttttcaaagacagtaccaagtaatggtggaaaatatttggaaatagtgctagttcctgttacagtattggatttgaagttgaaatgcttccttcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||   ||||||    
T  15964700 tacccttttcaaagacagtaccaagtaatggtggaaaatatttggaaatagagctatttcctgttacagtattggatttgaagttgaaatgacaccttcg 15964601  T
Q  201 atctcctttaaacaagtgaacatggttctccttgtgagatctcaatatagcatctattccactttcaaatgtggttcccttaagagcaggaaacatggtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15964600 atctcctttaaacaagtgaacatggttctccttgtgagatctcaatatagcatctattccactttcaaatgtggttcccttaagagcaggaaacatggtt 15964501  T
Q  301 ttgattggcataggaccttgaagtaatctggcttttgctaatgaatttggagtatagcttgttttcgcgcattgatcgccggagaagaagaatgcaacat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15964500 ttgattggcataggaccttgaagtaatctggcttttgctaatgaatttggagtgtagcttgttttcgcgcattgatcgccggagaagaagaatgcaacat 15964401  T
Q  401 tgtct 405  Q
    |||||    
T  15964400 tgtct 15964396  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 17726436 - 17726510
Alignment:
Q  50 ctttgaaaatgaaaacttcattttcaaagtgagtattaaaagctgcatcaatacccttttcaaagacagtaccaa 124  Q
    |||||||||||||||||||||   ||| ||||| ||||||||||||||||||||||  |||||||||||||||||    
T  17726436 ctttgaaaatgaaaacttcatcgccaaggtgagaattaaaagctgcatcaatacccccttcaaagacagtaccaa 17726510  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 405
Target Start/End: Original strand, 17726633 - 17726800
Alignment:
Q  241 ctcaatatagcatctattccactttcaaatgtggttcccttaagagcaggaaacatggttttgattggcataggaccttgaagtaatctggcttttgcta 340  Q
    ||||||||||| ||||||||| |||||||| |||||||||  |||  ||||||||||   ||||||||  ||||| |||||||||| ||||||||||||     
T  17726633 ctcaatatagcgtctattccattttcaaatatggttccctcgagacaaggaaacatgaccttgattggagtaggagcttgaagtaacctggcttttgctg 17726732  T
Q  341 a---tgaatttggagtatagcttgttttcgcgcattgatcgccggagaagaagaatgcaacattgtct 405  Q
    |   || || |||||  ||| |||||||  | |||||||| |  |||||||||||||| |||||||||    
T  17726733 atggtgcatctggagagtagtttgtttttacacattgatctctagagaagaagaatgctacattgtct 17726800  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 17592526 - 17592583
Alignment:
Q  84 attaaaagctgcatcaatacccttttcaaagacagtaccaagtaatggtggaaaatat 141  Q
    ||||||||||||||||||||||  |||||||||||| ||||| ||| |||| ||||||    
T  17592526 attaaaagctgcatcaatacccccttcaaagacagttccaagaaatagtgggaaatat 17592583  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 17699003 - 17699087
Alignment:
Q  248 tagcatctattccactttcaaatgtggttcccttaagagcaggaaacatggttttgattggcataggaccttgaagtaatctggc 332  Q
    |||||||||||||||||||||||  ||| ||||| |||  |||||||||  |  ||||||| ||||||||||  |||||||||||    
T  17699003 tagcatctattccactttcaaatacggtccccttgagacaaggaaacattttactgattggaataggaccttcgagtaatctggc 17699087  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 17592694 - 17592797
Alignment:
Q  249 agcatctattccactttcaaatgtggttcccttaagagcaggaaacatggttttgattggcataggaccttgaagtaatctggcttttgctaatgaattt 348  Q
    ||||||||||||| |||||||| |||||||||| |||  |||||||||||   | |||||    ||||||| |||||||||||| ||| ||  |||||||    
T  17592694 agcatctattccattttcaaatatggttcccttgagacaaggaaacatggcaataattggacctggaccttcaagtaatctggcattttctggtgaattt 17592793  T
Q  349 ggag 352  Q
    ||||    
T  17592794 ggag 17592797  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 17698833 - 17698880
Alignment:
Q  78 gtgagtattaaaagctgcatcaatacccttttcaaagacagtaccaag 125  Q
    ||||| ||||||||||||||||||||| | |||||||||||| |||||    
T  17698833 gtgagaattaaaagctgcatcaataccatgttcaaagacagttccaag 17698880  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 17735146 - 17735228
Alignment:
Q  50 ctttgaaaatgaaaacttcattttcaaagtgagtattaaaagctgcatcaatacccttttcaaagacagtaccaagtaatggt 132  Q
    ||||||| ||| |||||||||| | || || || |||||||||||| || ||||| | |||||| ||||||||||| ||||||    
T  17735146 ctttgaagatgtaaacttcattattaatgttagaattaaaagctgcgtctataccttgttcaaaaacagtaccaagaaatggt 17735228  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 377
Target Start/End: Original strand, 17735350 - 17735479
Alignment:
Q  248 tagcatctattccactttcaaatgtggttcccttaagagcaggaaacatggttttgattggcataggaccttgaagtaatctggcttttgctaatgaatt 347  Q
    |||| |||||||||  ||||||| |||||||||| ||   |||||||||  |  |||||||  ||||||||| ||||| |||||||||||||  ||| |     
T  17735350 tagcgtctattccatcttcaaatatggttcccttgaggcaaggaaacattttaatgattggactaggaccttcaagtattctggcttttgctggtgagtg 17735449  T
Q  348 tggagtatagcttgttttcgcgcattgatc 377  Q
    |||||||||   |||||| || ||||||||    
T  17735450 tggagtatacgctgtttttgcacattgatc 17735479  T

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