View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14624_low_1 (Length: 473)
Name: NF14624_low_1
Description: NF14624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14624_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 32126058 - 32125617
Alignment:
| Q |
19 |
aaatctaacagcagtggacttagcacattcttttcagattcaacattctcttgattcagcacctaataacaaaattcaaatacaaaaaatcaatctacta |
118 |
Q |
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| T |
32126058 |
aaatctaacagcagtggacttagcacattcttttcagattcaacactctcttgattcagcacctaataacaaaaatcaaatacaaaaaatcaatctacta |
32125959 |
T |
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| Q |
119 |
tttgacaatctactaaaaatatatgtaatacataaaatacattggttttaacaagactgggacaaacctgaggaatgagttgttcttgaacaacagaaga |
218 |
Q |
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| T |
32125958 |
tttgacaatctactaaaaatatatgtaatacataaaatacattggttttaagaagactgtgacaaacctgaggaatgagttgttcttgaacaacagaaga |
32125859 |
T |
|
| Q |
219 |
aggtgaaaactcaatgaaaccagtggcagtgttgtgcacattgagaatttgaggggtgtttgcaggagttggggcaagaagttgcattggagagttaaca |
318 |
Q |
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||||||||||||| |||||||| ||||||||| ||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32125858 |
aggtgaaaactcagtgaaaccaatggcagtgtcgtgaacattggggatttgaggggtgtttgcaggagttggggcaagaagttgcattggagagttaaca |
32125759 |
T |
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| Q |
319 |
aattgaagaaaaggacgaacatccattgtgagtttagaaatctcagcttcttcttcaactttctgcaaaagggtcttcacttgtcccctcaacaaagctt |
418 |
Q |
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| T |
32125758 |
aattgaagaaaaggacgaacatccattgtgagtttagaaatctcagcttcttcttcaactttctgcaaaagggtcttcacttgtcccctcaacaaagctt |
32125659 |
T |
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| Q |
419 |
caccagaaccaggagtcttcttcacccggcttcccctttgct |
460 |
Q |
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| T |
32125658 |
caccagaaccaggagtcttcttcacccggcttcctctttgct |
32125617 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 458
Target Start/End: Original strand, 8621485 - 8621576
Alignment:
| Q |
367 |
tcttcttcaactttctgcaaaagggtcttcacttgtcccctcaacaaagcttcaccagaaccaggagtcttcttcacccggcttcccctttg |
458 |
Q |
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||||||||||| |||||| ||||||||||||||| ||||||| ||| ||||||||||| || || || |||||||| || ||||| ||||| |
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| T |
8621485 |
tcttcttcaaccatctgcataagggtcttcacttgacccctcagcaaggcttcaccagatcctggtgtgttcttcacacgacttcctctttg |
8621576 |
T |
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