View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14624_low_3 (Length: 339)
Name: NF14624_low_3
Description: NF14624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14624_low_3 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 479762 - 479424
Alignment:
| Q |
1 |
gtgaggttaagaataacaaagaaagactccttaaacttaaggaataagagccagaatttctcctatcaagaaacaaaaggaatattgtttttaattaata |
100 |
Q |
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| T |
479762 |
gtgaggttaagaataacaaagaaaaactccttaaatttaaggaataagagccagaatttctcctatcaagaaacaaaagaaatattatttttaattaata |
479663 |
T |
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| Q |
101 |
cacttaatattaatgaagaaaataatataaataaagcaatgaaagagaagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatg |
200 |
Q |
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| T |
479662 |
cacttaatattaatgaagaaaataatataaataaagcaatgaaatagaagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatg |
479563 |
T |
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| Q |
201 |
acggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagcc |
300 |
Q |
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| T |
479562 |
acggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagcc |
479463 |
T |
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| Q |
301 |
attattggaaggtagtactccatgtctaaacatcccatc |
339 |
Q |
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| T |
479462 |
attattggaaggtagtactccatgtctaaacatcccatc |
479424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 151 - 325
Target Start/End: Complemental strand, 466672 - 466498
Alignment:
| Q |
151 |
tacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattc |
250 |
Q |
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| T |
466672 |
taccctgataaataagcgaggggagcaagaacaatggttgcaaaagcactacggtatactacaaatatccttggactcataccctccaaaagtgccattc |
466573 |
T |
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| Q |
251 |
ttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgt |
325 |
Q |
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| T |
466572 |
ttgtgccaagagtctgacctgcaaatattaactgtatcaacaacataactattattggcaggtagtactccatgt |
466498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 339
Target Start/End: Complemental strand, 474139 - 473950
Alignment:
| Q |
150 |
gtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaatt |
249 |
Q |
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| T |
474139 |
gtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgact |
474040 |
T |
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| Q |
250 |
cttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatc |
339 |
Q |
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| T |
474039 |
cttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatc |
473950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 445863 - 445767
Alignment:
| Q |
160 |
aaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaattcttgtgc |
256 |
Q |
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| T |
445863 |
aaataagcaattggagcaagaaaaatggttgcaaaagcattacggtacattacaaataccgccgggctcataccctccaaaagtgcaattcttgtgc |
445767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 332
Target Start/End: Complemental strand, 454850 - 454786
Alignment:
| Q |
268 |
cctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaaca |
332 |
Q |
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| T |
454850 |
cctgaatatataaactgtgtcaacaccatggccaatactggaaggtagtactccatgtctaaaca |
454786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 454956 - 454890
Alignment:
| Q |
151 |
tacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaata |
217 |
Q |
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| T |
454956 |
tacccagataaataagcaatgggagcaagaagaatggttgcaaaagcatgacggtaaactataaata |
454890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 474276 - 474232
Alignment:
| Q |
21 |
gaaagactccttaaacttaaggaataagagccagaatttctccta |
65 |
Q |
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| T |
474276 |
gaaaaactccttaaatttaaggaataagaggcagagtttctccta |
474232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 325
Target Start/End: Original strand, 27493754 - 27493931
Alignment:
| Q |
148 |
aagtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaa |
247 |
Q |
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| T |
27493754 |
aagtaccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaa |
27493853 |
T |
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| Q |
248 |
ttcttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgt |
325 |
Q |
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| T |
27493854 |
ttcttgtaccaagagtcaagcctgaatatattaactgtatcaataacataaccattattggtaagtagtactccatgt |
27493931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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