View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14624_low_4 (Length: 283)
Name: NF14624_low_4
Description: NF14624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14624_low_4 |
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| [»] scaffold0870 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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| [»] scaffold1983 (1 HSPs) |
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| [»] scaffold0889 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 24069480 - 24069729
Alignment:
| Q |
20 |
ctttcaccattattttcattgtttctattgtatgggccaaattaaggaacttgaaggttggctgtaagattactttcgccatttctttcactattatttt |
119 |
Q |
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| T |
24069480 |
ctttcgccattattttcattgtttctattgtatgggccaaattaaggaacttgaaggttggctgtaagattactttcgccattactttcactattatttt |
24069579 |
T |
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| Q |
120 |
gtagatgaccttaatggtgtagttagctgtaagattaagaaagtccaattgcaatgcctatattttcattgaagtacaaggtttgagtgccaataaacag |
219 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24069580 |
gtagatgaccttaatggtgtagttagcagtaagattaagaaaatccaattgcaatgcctatattttcattgaagtacaaggtttgagtgccaataaacag |
24069679 |
T |
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| Q |
220 |
atgagaaattagtaacattaattagaaccatgacaacaatatttcctagtataa |
273 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24069680 |
atgggaaattagtaac----attagaaccatgacaacaatatttcctagtataa |
24069729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 28572800 - 28572986
Alignment:
| Q |
20 |
ctttcaccattattttcattgtttctattgtatgggccaaattaaggaacttgaaggttggctgtaagattactttcgccatttctttcactattatttt |
119 |
Q |
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||||||||| |||||||||||||||| | ||||||||||||| ||||||| || |||||||||||||||||| |||||| ||||||||| |
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| T |
28572800 |
ctttcaccaatattttcattgtttctttcgtatgggccaaatcaaggaacctgtaggttggctgtaagattattttcgc------------tattatttt |
28572887 |
T |
|
| Q |
120 |
gtagatgaccttaatggtgtagttagctgtaagattaagaaagtccaattgcaatgcctatattttcattgaagtacaaggtttgagtgccaataaaca |
218 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| |
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| T |
28572888 |
ctagatgaccttaatagtgtagttatctgtaagattaagaaagtccaattgcaatgcttataatttcattgaagtacaaggtttgagtaccaataaaca |
28572986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 28566101 - 28566209
Alignment:
| Q |
125 |
tgaccttaatggtgtagttagctgtaagattaagaaagtccaattgcaatgcctatattttcattgaagtacaaggtttgagtgccaataaacagatgag |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||| |||||||| |||||||||| ||| | |
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| T |
28566101 |
tgaccttaatggtgtagttagctgtaagattaagaaagtataaatgcaatgcttataatttcattgaagtacacagtttgagtaccaataaacaaatggg |
28566200 |
T |
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| Q |
225 |
aaattagta |
233 |
Q |
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||||||||| |
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| T |
28566201 |
aaattagta |
28566209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 28565986 - 28566026
Alignment:
| Q |
29 |
ttattttcattgtttctattgtatgggccaaattaaggaac |
69 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
28565986 |
ttattttcattgtttcttttgtatgggccaaatcaaggaac |
28566026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 140 - 267
Target Start/End: Complemental strand, 251 - 128
Alignment:
| Q |
140 |
agttagctgtaagattaagaaagtccaattgcaatgcctatattttcattgaagtacaaggtttgagtgccaataaacagatgagaaattagtaacatta |
239 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||| ||| |||||||||| | |
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| T |
251 |
agttagctggaagattaagaaagtccaattgcaatgcctataatttcattgaaatacaaggtttgagtacaaataaacaaatgggaaattagtacc---- |
156 |
T |
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| Q |
240 |
attagaaccatgacaacaatatttccta |
267 |
Q |
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| |||||||||| |||||||||||||| |
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| T |
155 |
aagagaaccatgaaaacaatatttccta |
128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 301 - 209
Alignment:
| Q |
140 |
agttagctgtaagattaagaaagtccaattgcaatgcctatattttcattgaagtacaaggtttgagtgccaataaacagatgagaaattagta |
233 |
Q |
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||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||| |||||||||| |
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| T |
301 |
agttagctgtaagattaagaa-gttcaattgcaatgcttataatttcattgaagtacaaggtttgagtaccaataaacaaatgggaaattagta |
209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 301 - 209
Alignment:
| Q |
140 |
agttagctgtaagattaagaaagtccaattgcaatgcctatattttcattgaagtacaaggtttgagtgccaataaacagatgagaaattagta |
233 |
Q |
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||||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||| |||||||||| |
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| T |
301 |
agttagctgtaagattaagaa-gttcaattgcaatgcttataatttcattgaagtacaaggtttgagtaccaataaacaaatgggaaattagta |
209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1983 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1983
Description:
Target: scaffold1983; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 1119 - 1187
Alignment:
| Q |
20 |
ctttcaccattattttcattgtttctattgtatgggccaaattaaggaacttgaaggttggctgtaaga |
88 |
Q |
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||||||||| |||||||||||||||| | ||||||||||||| ||||||| || ||||||||||||||| |
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| T |
1119 |
ctttcaccaatattttcattgtttctttcgtatgggccaaatcaaggaacctgtaggttggctgtaaga |
1187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 47 - 1
Alignment:
| Q |
140 |
agttagctgtaagattaagaaagtccaattgcaatgcctatattttc |
186 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
47 |
agttagctggaagattaagaaagtccaattgcaatgcctataatttc |
1 |
T |
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