View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14624_low_6 (Length: 218)
Name: NF14624_low_6
Description: NF14624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14624_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 32158892 - 32158807
Alignment:
| Q |
4 |
ctgtactcataagtcaaacaaataaataattcccttgtttaagttaaaaatagagaaataatatttgtacatttaatttgtgataa |
89 |
Q |
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| T |
32158892 |
ctgtactcataagtcaaacaaataaataattcccttgtttaagttaaaagtagagaaataatatttgtacatttaatctgtgataa |
32158807 |
T |
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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 32158724 - 32158678
Alignment:
| Q |
172 |
cgtaagttgtcatgtaaatgatcgttcaaataacacaccttttaacc |
218 |
Q |
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| T |
32158724 |
cgtaagttgtcatgcaaatgatcgttcaaataacacaccttttaacc |
32158678 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 6884901 - 6884943
Alignment:
| Q |
47 |
ttaaaaatagagaaataatatttgtacatttaatttgtgataa |
89 |
Q |
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| T |
6884901 |
ttaaaaatagagaaatgatatttgtacaactaatttgtgataa |
6884943 |
T |
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