View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_high_12 (Length: 396)
Name: NF14625_high_12
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 37666388 - 37666770
Alignment:
| Q |
18 |
gttgcttccatgaaaaaatggcttagcccatctttacaattaggtaacaacaggtactcaaattacaagccattagggtggaaatgtcattgtggtgacc |
117 |
Q |
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| T |
37666388 |
gttgcttccatgaaaaaatggcttagcccatctttacaattaggtaacagcaggtactcaaattacaagccattagggtggaaatgtcattgtggtgacc |
37666487 |
T |
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| Q |
118 |
acttcttcaatccttaattagaaattgtacacccttgtggatccaagattttgctcctcctaatcaagtaaaatgaaaatgaaaat------tacccatc |
211 |
Q |
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| T |
37666488 |
acttcttcaacccttaattagaaattgtacacccttgtggatccaagattttgctcctcctaatcaagtaaaatgaaaatgaaaatgaaaattacccatc |
37666587 |
T |
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| Q |
212 |
nnnnnnngtattaaattatcaatattaattaattaatgatatttgtgttttaattactagtatagttttaggtgtcctatgtggttaatgcgacgtttgc |
311 |
Q |
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| T |
37666588 |
tttttttgtattaaattatcaatattaattaattaatgatatttgtgttttaattactagtatagttttaggtgtcctatgtggttaatccgacgtttgc |
37666687 |
T |
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| Q |
312 |
gtcagcattgattgtatacaagtttgatgatagtacgtagtacatttgtacaaagtttgttatagacctgaattcctatgtta |
394 |
Q |
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| T |
37666688 |
gtcagcattgattgtatacaagtttgatgatagtacgtagtacatttgtacaaagtttgttatagacctgaattcctatgtta |
37666770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 39454619 - 39454680
Alignment:
| Q |
72 |
tactcaaattacaagccattagggtggaaatgtcattgtggtgaccacttcttcaatcctta |
133 |
Q |
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| T |
39454619 |
tactcaaattacaagccattgagttggaaatgccattgtggtggcaacttcttcaaccctta |
39454680 |
T |
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