View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_high_16 (Length: 338)
Name: NF14625_high_16
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 14542936 - 14542624
Alignment:
| Q |
13 |
aaatgcttatgaatgattgttgtgcatcaaagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14542936 |
aaatgcttatgaatgattgttgtgcatcaaagaacattgcaactgcaacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttc |
14542837 |
T |
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| Q |
113 |
tataattacatcccatgataaaattggtttcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccatagctattgaa |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14542836 |
tataattacatcccatgacaaaattggtttcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccattgctattgaa |
14542737 |
T |
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| Q |
213 |
aatgnnnnnnnnnnnnnnnnnnnnnnngttatgatgatgtttgaggttgaggaatgtgagggatgagtgtgtggttttatagtgcacaaagacaatttaa |
312 |
Q |
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| T |
14542736 |
aatgttttttggtattttttttgttttgttatgatgatgtttgaggttgaggaatgtgagggatgagtgtgtggctttatagtgcacaaagacaatttaa |
14542637 |
T |
|
| Q |
313 |
aatctactatttt |
325 |
Q |
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||||||||||||| |
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| T |
14542636 |
aatctactatttt |
14542624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 14580651 - 14580848
Alignment:
| Q |
13 |
aaatgcttatgaatgattgttgtgcatcaaagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14580651 |
aaatgcttatgaatgattgttgtgcatcaaagaacattgcaactgcaacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttc |
14580750 |
T |
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| Q |
113 |
tataattacatcccatgataaaattggtttcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccatagctattg |
210 |
Q |
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| T |
14580751 |
tataattacatcccatgacaaaattggtttcttttcttgctcaatattggaatgagattcaagtacattaatttgtactgaaccttccattgctattg |
14580848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 14580887 - 14580952
Alignment:
| Q |
247 |
tgatgtttgaggttgaggaa--tgtgagggatgagtgtgtggttttatagtgcacaaagacaattt |
310 |
Q |
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| T |
14580887 |
tgatgtttgaggttgaagatattgtgagggatgagtgtgtggttttatagtgcacaaggacaattt |
14580952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 35622991 - 35623177
Alignment:
| Q |
23 |
gaatgattgttgtgcatcaaagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctataattaca |
122 |
Q |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35622991 |
gaatgattgttgtgcatcaaagaacattgctattgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttctatgattaca |
35623090 |
T |
|
| Q |
123 |
tcccatgataaaattggtttcttttcttgctcaatattggaatgagattcaggtacattaatttgtactgaaccttccatagctatt |
209 |
Q |
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| T |
35623091 |
tcccatgataaccttggtttattttcttgctcaatattggaacgagattcaggtacatcaatttgcaccggaccttccattgctatt |
35623177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 34263874 - 34263991
Alignment:
| Q |
13 |
aaatgcttatgaatgattgttgtgcatcaaagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttc |
112 |
Q |
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|||||||||||||||| |||||||||||||||||||| || | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
34263874 |
aaatgcttatgaatgactgttgtgcatcaaagaacatagcaaatgctacaagaacagcttgaaagaaatccatccaaccaaaatttgataaacttttttc |
34263973 |
T |
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| Q |
113 |
tataattacatcccatga |
130 |
Q |
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||| ||| |||||||||| |
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| T |
34263974 |
tattatttcatcccatga |
34263991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 37599884 - 37599764
Alignment:
| Q |
13 |
aaatgcttatgaatgattgttgtgcatcaaagaacatggctactgctacaagaacagcttgtaagaaatccatccacccaaaatttgataaacttttttc |
112 |
Q |
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|||||||||| ||||| | |||||||||||||||||| || | |||||||||||||||||| || |||||||| || ||||||||||||||| |||| |
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| T |
37599884 |
aaatgcttataaatgactcttgtgcatcaaagaacatagcaattgctacaagaacagcttgaaataaatccattcaaccaaaatttgataaaaaaatttc |
37599785 |
T |
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| Q |
113 |
tataattacatcccatgataa |
133 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
37599784 |
tataatttcatcccatgataa |
37599764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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