View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_high_18 (Length: 332)
Name: NF14625_high_18
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_high_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 170 - 332
Target Start/End: Original strand, 14542485 - 14542647
Alignment:
| Q |
170 |
ctcagtgcatgttcatataatattcctggtccacaatggtggtacgtaaccagccacttgcaaatggacaaatatcttatagccaccaaaataacaccat |
269 |
Q |
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| T |
14542485 |
ctcagtgcatgttcatataatatttctggtccacaatggtggtacgtaaccagccacttgcaaatggacaaatatcttatagccaccaaaataacaccat |
14542584 |
T |
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| Q |
270 |
aaacatttttactaatagatttcagaaattgagtccnnnnnnntagtagattttaaattgtct |
332 |
Q |
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| T |
14542585 |
aaacatttttactaatagatttcagaaattgagtccaaaaaaatagtagattttaaattgtct |
14542647 |
T |
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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 14542316 - 14542393
Alignment:
| Q |
1 |
atgtgatgcatagaaaagtgaaagaaaacattttatttttcaggaaagagagaaaggaaacatagaactgataataat |
78 |
Q |
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| T |
14542316 |
atgtgatgcatagaaaagtgaaaggaaacattttatttttcaggaaagagagaaaggaaacatagaactgataataat |
14542393 |
T |
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