View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14625_high_2 (Length: 582)
Name: NF14625_high_2
Description: NF14625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14625_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 13134285 - 13133714
Alignment:
| Q |
1 |
tcatcatcgtatataccttt---aagctcttataactttgcttgttctgatgatgctggtggtggtgttcttcttaaaatactaatactcaaatatgtat |
97 |
Q |
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| T |
13134285 |
tcatcatcatatatacctttgataagctcttataactttgcttgttctgatgatgctggtggtggtgttcttcttaaaatactactactcaaatatgtat |
13134186 |
T |
|
| Q |
98 |
gtgtgtgtagttgaggaaattaaggaaggataaacaataacttatgggatatgattcatatgaataga----atgaagtgaaatagaaagggtggtgaag |
193 |
Q |
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| T |
13134185 |
gtgtgtgtagttgaggaaattaaggaaggataaactataacttatgggatatgattcatatgaatagatagaatgaagtgaaatagaaagga-----aag |
13134091 |
T |
|
| Q |
194 |
tgttgcgggaaaggaaagtaggcgtggaaaatattatttaaacacttaagagagtgtatcaactagagaaaaggtgcaagttgaagaaagtaaagaaact |
293 |
Q |
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| T |
13134090 |
--------gaaaggaaagtaggcgtggga--tattatttaaacactttagagagtgtatcaactagagaaaaggtgcaagttgaagaaagtaaagaaact |
13134001 |
T |
|
| Q |
294 |
ttcatgtgtgtttttgaaatatttccaaagttatgagtctcaactctgaagtaagctgattttgttaattaactttacatattttatatactaatattag |
393 |
Q |
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| T |
13134000 |
ttcatgtgtgtttttgaaatatttccaaagttatgagtctcaactctgaagtaagctgattttgttaattaactttacatattttatatactaatattag |
13133901 |
T |
|
| Q |
394 |
attggacttgtaaaataagctagtatttccaaccgaatcaaagagtcgtcaaaacggaagagaacaatcctaactaggttgacaccatcaatcaagaaga |
493 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
13133900 |
attggacttgtaaaataagctagtattttcaactgaatcaaagagtcgtcaaaatgaaagaggacaattctaactaggttgacaccatcaatcaagaaga |
13133801 |
T |
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| Q |
494 |
caacaacgaccaccaaannnnnnnnattaaaaaacgatgaaaaataaagaggtgtcatgagggacaagaaccaaaactcattaaaac |
580 |
Q |
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| T |
13133800 |
caacaacgaccaccaaattttttttattaaaaaacgatgaaaaataaagaggtgtcatgagggacaagaaccaaaactcattaaaac |
13133714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 30237352 - 30237512
Alignment:
| Q |
24 |
ctcttataactttgcttgttctgatgatgctggtggtggtgttcttcttaaaatactaatactcaaatatgtatgtgtgtgtagttgaggaaattaagga |
123 |
Q |
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| T |
30237352 |
ctcttataactt-gcttgttctgatg---ccagtggtgttattcttcttaaaatactactactcatatatggatgtgtgtgtagttgaggaaattaagga |
30237447 |
T |
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| Q |
124 |
aggataaacaataacttatgggatatgattcatatgaatagaatgaagtgaaatagaaagggtgg |
188 |
Q |
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| T |
30237448 |
aggattaaatataacttatgggatatggttcatatgaatagaatgaagtgaaatagaaagggtgg |
30237512 |
T |
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